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Cluster: Rep_2160_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2160_c_0 Rep_2160_c_0_1279 1483167 1484159 + 9.B.157.1.1
TC Rep_2160_c_0 Rep_2160_c_0_1280 1484175 1486424 + 3.A.7.16.1
TC Rep_2160_c_0 Rep_2160_c_0_1281 1486452 1487174 + 3.A.11.1.4
pfam Rep_2160_c_0 Rep_2160_c_0_1282 1487290 1488066 + His_biosynth
CAZyme Rep_2160_c_0 Rep_2160_c_0_1283 1488165 1490453 + CBM4 | GH9
pfam Rep_2160_c_0 Rep_2160_c_0_1284 1490536 1493718 + GtrA_DPMS_TM | YfhO
TC Rep_2160_c_0 Rep_2160_c_0_1285 1494018 1495769 + 2.A.21.9.2
Gene ID: Rep_2160_c_0_1279
Type: TC
Location: 1483167 - 1484159 (+)
Gene ID: Rep_2160_c_0_1280
Type: TC
Location: 1484175 - 1486424 (+)
Gene ID: Rep_2160_c_0_1281
Type: TC
Location: 1486452 - 1487174 (+)
Gene ID: Rep_2160_c_0_1282
Type: pfam
Location: 1487290 - 1488066 (+)
Gene ID: Rep_2160_c_0_1283
Type: CAZyme
Location: 1488165 - 1490453 (+)
Gene ID: Rep_2160_c_0_1284
Type: pfam
Location: 1490536 - 1493718 (+)
Gene ID: Rep_2160_c_0_1285
Type: TC
Location: 1494018 - 1495769 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2160_c_0_1282 vegetarian > omnivore 1.11382 0.02148

🧭 Explore Read Mapping of CGC

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