Cluster: Rep_2160_CGC12
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_2160
- CGC Family ID: CGCFAM_09960
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2160_c_0 | Rep_2160_c_0_1087 | 1234407 | 1236161 | + | 1.A.33.1.4 |
| NULL(UNKNOWN) | Rep_2160_c_0 | Rep_2160_c_0_1088 | 1236267 | 1236662 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_2160_c_0 | Rep_2160_c_0_1089 | 1236677 | 1237588 | + | 1.E.12.1.3 |
| STP | Rep_2160_c_0 | Rep_2160_c_0_1090 | 1237589 | 1238389 | + | TPR_2 |
| CAZyme | Rep_2160_c_0 | Rep_2160_c_0_1091 | 1238745 | 1241189 | + | GT35 |
| pfam | Rep_2160_c_0 | Rep_2160_c_0_1092 | 1241907 | 1244288 | - | NosD | NosD | Beta_helix | Beta_helix | Beta_helix |
| pfam | Rep_2160_c_0 | Rep_2160_c_0_1093 | 1244325 | 1247003 | - | NosD | NosD | Beta_helix | Beta_helix | Beta_helix |
| CAZyme | Rep_2160_c_0 | Rep_2160_c_0_1094 | 1247025 | 1247975 | - | GT2 |
| CAZyme | Rep_2160_c_0 | Rep_2160_c_0_1095 | 1248272 | 1250923 | + | GT27 |
| CAZyme | Rep_2160_c_0 | Rep_2160_c_0_1096 | 1251044 | 1253527 | - | GH94 |
Gene ID: Rep_2160_c_0_1087
Type: TC
Location: 1234407 - 1236161 (+)
Type: TC
Location: 1234407 - 1236161 (+)
Gene ID: Rep_2160_c_0_1088
Type:
Location: 1236267 - 1236662 (+)
Type:
Location: 1236267 - 1236662 (+)
Gene ID: Rep_2160_c_0_1089
Type: TC
Location: 1236677 - 1237588 (+)
Type: TC
Location: 1236677 - 1237588 (+)
Gene ID: Rep_2160_c_0_1090
Type: STP
Location: 1237589 - 1238389 (+)
Type: STP
Location: 1237589 - 1238389 (+)
Gene ID: Rep_2160_c_0_1091
Type: CAZyme
Location: 1238745 - 1241189 (+)
Type: CAZyme
Location: 1238745 - 1241189 (+)
Gene ID: Rep_2160_c_0_1092
Type: pfam
Location: 1241907 - 1244288 (-)
Type: pfam
Location: 1241907 - 1244288 (-)
Gene ID: Rep_2160_c_0_1093
Type: pfam
Location: 1244325 - 1247003 (-)
Type: pfam
Location: 1244325 - 1247003 (-)
Gene ID: Rep_2160_c_0_1094
Type: CAZyme
Location: 1247025 - 1247975 (-)
Type: CAZyme
Location: 1247025 - 1247975 (-)
Gene ID: Rep_2160_c_0_1095
Type: CAZyme
Location: 1248272 - 1250923 (+)
Type: CAZyme
Location: 1248272 - 1250923 (+)
Gene ID: Rep_2160_c_0_1096
Type: CAZyme
Location: 1251044 - 1253527 (-)
Type: CAZyme
Location: 1251044 - 1253527 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus sp000154245
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2160_c_0_1088 | vegan > omnivore | 1.21780 | 0.02695 |
| Rep_2160_c_0_1090 | vegan > omnivore | 1.02395 | 0.02695 |