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Cluster: Rep_2160_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2160_c_0 Rep_2160_c_0_1064 1205696 1209169 + CBM4 | CBM4 | CBM4 | GH16_3
TC Rep_2160_c_0 Rep_2160_c_0_1065 1209265 1210149 - 2.A.115.1.1
peptidase Rep_2160_c_0 Rep_2160_c_0_1066 1210343 1211413 + S09.UPW
TC Rep_2160_c_0 Rep_2160_c_0_1067 1211493 1212326 + 3.A.1.132.3
pfam Rep_2160_c_0 Rep_2160_c_0_1068 1212323 1213237 + Radical_SAM | Fer4_12
pfam Rep_2160_c_0 Rep_2160_c_0_1069 1213252 1214454 - DHHW | DHHW | ALGX
TC Rep_2160_c_0 Rep_2160_c_0_1070 1214663 1216090 - 2.A.50.2.1
Gene ID: Rep_2160_c_0_1064
Type: CAZyme
Location: 1205696 - 1209169 (+)
Gene ID: Rep_2160_c_0_1065
Type: TC
Location: 1209265 - 1210149 (-)
Gene ID: Rep_2160_c_0_1066
Type: peptidase
Location: 1210343 - 1211413 (+)
Gene ID: Rep_2160_c_0_1067
Type: TC
Location: 1211493 - 1212326 (+)
Gene ID: Rep_2160_c_0_1068
Type: pfam
Location: 1212323 - 1213237 (+)
Gene ID: Rep_2160_c_0_1069
Type: pfam
Location: 1213252 - 1214454 (-)
Gene ID: Rep_2160_c_0_1070
Type: TC
Location: 1214663 - 1216090 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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