Cluster: Rep_2160_CGC1
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2160
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2160_c_0 | Rep_2160_c_0_39 | 42281 | 43381 | - | 3.A.11.1.3 |
| peptidase | Rep_2160_c_0 | Rep_2160_c_0_40 | 43371 | 44954 | - | S16.UNW |
| pfam | Rep_2160_c_0 | Rep_2160_c_0_41 | 45115 | 46077 | - | cobW | DUF1980_C |
| TC | Rep_2160_c_0 | Rep_2160_c_0_42 | 46087 | 47193 | - | 9.B.10.1.1 |
| TC | Rep_2160_c_0 | Rep_2160_c_0_43 | 47496 | 48431 | - | 1.A.23.2.2 |
| CAZyme | Rep_2160_c_0 | Rep_2160_c_0_44 | 48436 | 50349 | - | GH13_9 |
Gene ID: Rep_2160_c_0_39
Type: TC
Location: 42281 - 43381 (-)
Type: TC
Location: 42281 - 43381 (-)
Gene ID: Rep_2160_c_0_40
Type: peptidase
Location: 43371 - 44954 (-)
Type: peptidase
Location: 43371 - 44954 (-)
Gene ID: Rep_2160_c_0_41
Type: pfam
Location: 45115 - 46077 (-)
Type: pfam
Location: 45115 - 46077 (-)
Gene ID: Rep_2160_c_0_42
Type: TC
Location: 46087 - 47193 (-)
Type: TC
Location: 46087 - 47193 (-)
Gene ID: Rep_2160_c_0_43
Type: TC
Location: 47496 - 48431 (-)
Type: TC
Location: 47496 - 48431 (-)
Gene ID: Rep_2160_c_0_44
Type: CAZyme
Location: 48436 - 50349 (-)
Type: CAZyme
Location: 48436 - 50349 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus sp000154245
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2160_c_0_43 | vegan > omnivore | 1.30496 | 0.02695 |
| Rep_2160_c_0_43 | vegetarian > omnivore | 1.21151 | 0.02148 |
| Rep_2160_c_0_44 | vegan > omnivore | 1.47184 | 0.02695 |