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Cluster: Rep_2158_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2158_c_0 Rep_2158_c_0_472 563847 564629 + GT2
CAZyme Rep_2158_c_0 Rep_2158_c_0_473 564651 565682 + GT2
TC Rep_2158_c_0 Rep_2158_c_0_474 565711 566499 + 3.A.1.103.4
TC Rep_2158_c_0 Rep_2158_c_0_475 566512 567738 + 3.A.1.103.5
CAZyme Rep_2158_c_0 Rep_2158_c_0_476 567811 569643 + GT2
pfam Rep_2158_c_0 Rep_2158_c_0_477 569680 570780 + GLF | NAD_binding_8
STP Rep_2158_c_0 Rep_2158_c_0_478 570951 574772 + EAL | GGDEF | Peripla_BP_3
TC Rep_2158_c_0 Rep_2158_c_0_479 574877 576307 + 2.A.50.2.1
Gene ID: Rep_2158_c_0_472
Type: CAZyme
Location: 563847 - 564629 (+)
Gene ID: Rep_2158_c_0_473
Type: CAZyme
Location: 564651 - 565682 (+)
Gene ID: Rep_2158_c_0_474
Type: TC
Location: 565711 - 566499 (+)
Gene ID: Rep_2158_c_0_475
Type: TC
Location: 566512 - 567738 (+)
Gene ID: Rep_2158_c_0_476
Type: CAZyme
Location: 567811 - 569643 (+)
Gene ID: Rep_2158_c_0_477
Type: pfam
Location: 569680 - 570780 (+)
Gene ID: Rep_2158_c_0_478
Type: STP
Location: 570951 - 574772 (+)
Gene ID: Rep_2158_c_0_479
Type: TC
Location: 574877 - 576307 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2158_c_0_474 vegetarian > vegan 1.08500 0.00516

🧭 Explore Read Mapping of CGC

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