Cluster: Rep_2158_CGC36
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_2158
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2158_c_0 | Rep_2158_c_0_2517 | 2885994 | 2887388 | - | 2.A.2.3.3 |
| CAZyme | Rep_2158_c_0 | Rep_2158_c_0_2518 | 2887557 | 2890598 | - | GH2 |
| TF | Rep_2158_c_0 | Rep_2158_c_0_2519 | 2890959 | 2891825 | + | HTH_AraC | HTH_AraC |
| TC | Rep_2158_c_0 | Rep_2158_c_0_2520 | 2892678 | 2894420 | - | 3.A.1.106.2 |
| CAZyme | Rep_2158_c_0 | Rep_2158_c_0_2521 | 2894467 | 2895423 | - | GH113 |
Gene ID: Rep_2158_c_0_2517
Type: TC
Location: 2885994 - 2887388 (-)
Type: TC
Location: 2885994 - 2887388 (-)
Gene ID: Rep_2158_c_0_2518
Type: CAZyme
Location: 2887557 - 2890598 (-)
Type: CAZyme
Location: 2887557 - 2890598 (-)
Gene ID: Rep_2158_c_0_2519
Type: TF
Location: 2890959 - 2891825 (+)
Type: TF
Location: 2890959 - 2891825 (+)
Gene ID: Rep_2158_c_0_2520
Type: TC
Location: 2892678 - 2894420 (-)
Type: TC
Location: 2892678 - 2894420 (-)
Gene ID: Rep_2158_c_0_2521
Type: CAZyme
Location: 2894467 - 2895423 (-)
Type: CAZyme
Location: 2894467 - 2895423 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus eutactus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2158_c_0_2520 | vegetarian > omnivore | 1.42232 | 0.00834 |
| Rep_2158_c_0_2520 | vegetarian > vegan | 1.92071 | 0.00455 |
| Rep_2158_c_0_2521 | vegetarian > omnivore | 1.41656 | 0.01611 |
| Rep_2158_c_0_2521 | vegetarian > vegan | 1.70421 | 0.00516 |