Cluster: Rep_2158_CGC3
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2158
- CGC Family ID: CGCFAM_02244
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2158_c_0 | Rep_2158_c_0_155 | 150163 | 150735 | + | 3.A.1.25.5 |
| NULL(UNKNOWN) | Rep_2158_c_0 | Rep_2158_c_0_156 | 151096 | 151317 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_2158_c_0 | Rep_2158_c_0_157 | 151317 | 152882 | - | CBM50 |
| pfam | Rep_2158_c_0 | Rep_2158_c_0_158 | 152916 | 153365 | - | PrcB_C |
| pfam | Rep_2158_c_0 | Rep_2158_c_0_159 | 153643 | 155460 | - | tRNA-synt_2 | tRNA_anti-codon | GAD |
| TC | Rep_2158_c_0 | Rep_2158_c_0_160 | 155513 | 156136 | - | 8.A.59.4.1 |
Gene ID: Rep_2158_c_0_155
Type: TC
Location: 150163 - 150735 (+)
Type: TC
Location: 150163 - 150735 (+)
Gene ID: Rep_2158_c_0_156
Type:
Location: 151096 - 151317 (-)
Type:
Location: 151096 - 151317 (-)
Gene ID: Rep_2158_c_0_157
Type: CAZyme
Location: 151317 - 152882 (-)
Type: CAZyme
Location: 151317 - 152882 (-)
Gene ID: Rep_2158_c_0_158
Type: pfam
Location: 152916 - 153365 (-)
Type: pfam
Location: 152916 - 153365 (-)
Gene ID: Rep_2158_c_0_159
Type: pfam
Location: 153643 - 155460 (-)
Type: pfam
Location: 153643 - 155460 (-)
Gene ID: Rep_2158_c_0_160
Type: TC
Location: 155513 - 156136 (-)
Type: TC
Location: 155513 - 156136 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus eutactus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2158_c_0_155 | vegetarian > omnivore | 1.03536 | 0.01611 |