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Cluster: Rep_2158_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2158_c_0 Rep_2158_c_0_1557 1773338 1773691 + 3.A.1.134.3
TC Rep_2158_c_0 Rep_2158_c_0_1558 1773733 1773987 + 3.A.1.122.14
TF Rep_2158_c_0 Rep_2158_c_0_1559 1774151 1774774 - HTH_AraC
CAZyme Rep_2158_c_0 Rep_2158_c_0_1560 1774999 1778634 + CBM4 | CBM4 | CBM4 | GH16_3
pfam Rep_2158_c_0 Rep_2158_c_0_1561 1779139 1779912 + Exo_endo_phos
pfam Rep_2158_c_0 Rep_2158_c_0_1562 1780101 1781645 + Phosphodiest | Metalloenzyme | iPGM_N
TC Rep_2158_c_0 Rep_2158_c_0_1563 1781731 1782150 + 1.A.22.1.8
Gene ID: Rep_2158_c_0_1557
Type: TC
Location: 1773338 - 1773691 (+)
Gene ID: Rep_2158_c_0_1558
Type: TC
Location: 1773733 - 1773987 (+)
Gene ID: Rep_2158_c_0_1559
Type: TF
Location: 1774151 - 1774774 (-)
Gene ID: Rep_2158_c_0_1560
Type: CAZyme
Location: 1774999 - 1778634 (+)
Gene ID: Rep_2158_c_0_1561
Type: pfam
Location: 1779139 - 1779912 (+)
Gene ID: Rep_2158_c_0_1562
Type: pfam
Location: 1780101 - 1781645 (+)
Gene ID: Rep_2158_c_0_1563
Type: TC
Location: 1781731 - 1782150 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2158_c_0_1560 vegetarian > vegan 1.09960 0.00516

🧭 Explore Read Mapping of CGC

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