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Cluster: Rep_2158_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2158_c_0 Rep_2158_c_0_956 1081592 1082776 + 2.A.4.7.6
STP Rep_2158_c_0 Rep_2158_c_0_957 1083009 1083806 + SBP_bac_3
TC Rep_2158_c_0 Rep_2158_c_0_958 1083859 1084545 + 3.A.1.3.14
TC Rep_2158_c_0 Rep_2158_c_0_959 1084734 1085513 + 3.A.1.3.14
NULL(UNKNOWN) Rep_2158_c_0 Rep_2158_c_0_960 1085881 1086414 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_2158_c_0 Rep_2158_c_0_961 1086610 1087044 - Cupin_1 | Cupin_2
TC Rep_2158_c_0 Rep_2158_c_0_962 1087336 1088673 + 3.A.1.1.45
TC Rep_2158_c_0 Rep_2158_c_0_963 1088940 1089782 + 3.A.1.1.45
TC Rep_2158_c_0 Rep_2158_c_0_964 1089782 1090675 + 3.A.1.1.45
CAZyme Rep_2158_c_0 Rep_2158_c_0_965 1090759 1092258 + GH77
Gene ID: Rep_2158_c_0_956
Type: TC
Location: 1081592 - 1082776 (+)
Gene ID: Rep_2158_c_0_957
Type: STP
Location: 1083009 - 1083806 (+)
Gene ID: Rep_2158_c_0_958
Type: TC
Location: 1083859 - 1084545 (+)
Gene ID: Rep_2158_c_0_959
Type: TC
Location: 1084734 - 1085513 (+)
Gene ID: Rep_2158_c_0_960
Type:
Location: 1085881 - 1086414 (+)
Gene ID: Rep_2158_c_0_961
Type: pfam
Location: 1086610 - 1087044 (-)
Gene ID: Rep_2158_c_0_962
Type: TC
Location: 1087336 - 1088673 (+)
Gene ID: Rep_2158_c_0_963
Type: TC
Location: 1088940 - 1089782 (+)
Gene ID: Rep_2158_c_0_964
Type: TC
Location: 1089782 - 1090675 (+)
Gene ID: Rep_2158_c_0_965
Type: CAZyme
Location: 1090759 - 1092258 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2158_c_0_958 vegan > omnivore 1.01450 0.01612
Rep_2158_c_0_958 vegetarian > omnivore 1.34185 0.00343
Rep_2158_c_0_959 vegan > omnivore 1.08914 0.04819

🧭 Explore Read Mapping of CGC

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