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Cluster: Rep_2158_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2158_c_0 Rep_2158_c_0_718 835047 836582 + GH77
CAZyme Rep_2158_c_0 Rep_2158_c_0_719 836700 838949 + GT35
TF Rep_2158_c_0 Rep_2158_c_0_720 839121 840638 + HTH_AraC
TC Rep_2158_c_0 Rep_2158_c_0_721 840697 842409 + 8.A.59.2.1
STP Rep_2158_c_0 Rep_2158_c_0_722 842784 844085 + SBP_bac_1
TC Rep_2158_c_0 Rep_2158_c_0_723 844192 845586 + 3.A.1.1.27
TC Rep_2158_c_0 Rep_2158_c_0_724 845586 846461 + 3.A.1.1.27
TC Rep_2158_c_0 Rep_2158_c_0_725 846511 848220 + 3.A.1.1.9
pfam Rep_2158_c_0 Rep_2158_c_0_726 848623 849192 + ToxN_toxin
pfam Rep_2158_c_0 Rep_2158_c_0_727 849189 849887 + Hydrolase | Hydrolase_like | HAD_2
TC Rep_2158_c_0 Rep_2158_c_0_728 849939 851267 - 2.A.66.1.37
Gene ID: Rep_2158_c_0_718
Type: CAZyme
Location: 835047 - 836582 (+)
Gene ID: Rep_2158_c_0_719
Type: CAZyme
Location: 836700 - 838949 (+)
Gene ID: Rep_2158_c_0_720
Type: TF
Location: 839121 - 840638 (+)
Gene ID: Rep_2158_c_0_721
Type: TC
Location: 840697 - 842409 (+)
Gene ID: Rep_2158_c_0_722
Type: STP
Location: 842784 - 844085 (+)
Gene ID: Rep_2158_c_0_723
Type: TC
Location: 844192 - 845586 (+)
Gene ID: Rep_2158_c_0_724
Type: TC
Location: 845586 - 846461 (+)
Gene ID: Rep_2158_c_0_725
Type: TC
Location: 846511 - 848220 (+)
Gene ID: Rep_2158_c_0_726
Type: pfam
Location: 848623 - 849192 (+)
Gene ID: Rep_2158_c_0_727
Type: pfam
Location: 849189 - 849887 (+)
Gene ID: Rep_2158_c_0_728
Type: TC
Location: 849939 - 851267 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2158_c_0_728 vegetarian > vegan 1.90873 0.00516

🧭 Explore Read Mapping of CGC

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