Cluster: Rep_2158_CGC13
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_2158
- CGC Family ID: CGCFAM_00022
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2158_c_0 | Rep_2158_c_0_675 | 795577 | 796395 | + | 8.A.3.2.3 |
| TC | Rep_2158_c_0 | Rep_2158_c_0_676 | 796392 | 797135 | + | 8.A.3.2.2 |
| NULL(UNKNOWN) | Rep_2158_c_0 | Rep_2158_c_0_677 | 797230 | 798234 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_2158_c_0 | Rep_2158_c_0_678 | 798436 | 799887 | + | 9.B.18.1.2 |
| CAZyme | Rep_2158_c_0 | Rep_2158_c_0_679 | 799890 | 801014 | + | GT4 |
| CAZyme | Rep_2158_c_0 | Rep_2158_c_0_680 | 801392 | 802513 | + | GT4 |
Gene ID: Rep_2158_c_0_675
Type: TC
Location: 795577 - 796395 (+)
Type: TC
Location: 795577 - 796395 (+)
Gene ID: Rep_2158_c_0_676
Type: TC
Location: 796392 - 797135 (+)
Type: TC
Location: 796392 - 797135 (+)
Gene ID: Rep_2158_c_0_677
Type:
Location: 797230 - 798234 (+)
Type:
Location: 797230 - 798234 (+)
Gene ID: Rep_2158_c_0_678
Type: TC
Location: 798436 - 799887 (+)
Type: TC
Location: 798436 - 799887 (+)
Gene ID: Rep_2158_c_0_679
Type: CAZyme
Location: 799890 - 801014 (+)
Type: CAZyme
Location: 799890 - 801014 (+)
Gene ID: Rep_2158_c_0_680
Type: CAZyme
Location: 801392 - 802513 (+)
Type: CAZyme
Location: 801392 - 802513 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus eutactus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2158_c_0_676 | vegan > omnivore | 1.25941 | 0.04819 |
| Rep_2158_c_0_676 | vegetarian > omnivore | 1.07692 | 0.01611 |