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Cluster: Rep_2158_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2158_c_0 Rep_2158_c_0_660 773468 774997 + 2.A.66.1.32
STP Rep_2158_c_0 Rep_2158_c_0_661 775176 776666 + AAA
TF Rep_2158_c_0 Rep_2158_c_0_662 776757 777818 + LacI
TC Rep_2158_c_0 Rep_2158_c_0_663 778265 779743 + 3.A.1.1.45
TC Rep_2158_c_0 Rep_2158_c_0_664 779850 780746 + 3.A.1.1.45
TC Rep_2158_c_0 Rep_2158_c_0_665 780746 781582 + 3.A.1.1.45
CAZyme Rep_2158_c_0 Rep_2158_c_0_666 781592 783289 + GH13_31
CAZyme Rep_2158_c_0 Rep_2158_c_0_667 783676 786000 + GH36
Gene ID: Rep_2158_c_0_660
Type: TC
Location: 773468 - 774997 (+)
Gene ID: Rep_2158_c_0_661
Type: STP
Location: 775176 - 776666 (+)
Gene ID: Rep_2158_c_0_662
Type: TF
Location: 776757 - 777818 (+)
Gene ID: Rep_2158_c_0_663
Type: TC
Location: 778265 - 779743 (+)
Gene ID: Rep_2158_c_0_664
Type: TC
Location: 779850 - 780746 (+)
Gene ID: Rep_2158_c_0_665
Type: TC
Location: 780746 - 781582 (+)
Gene ID: Rep_2158_c_0_666
Type: CAZyme
Location: 781592 - 783289 (+)
Gene ID: Rep_2158_c_0_667
Type: CAZyme
Location: 783676 - 786000 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2158_c_0_663 vegetarian > vegan 1.06565 0.00516
Rep_2158_c_0_665 vegetarian > vegan 1.20536 0.00516

🧭 Explore Read Mapping of CGC

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