Cluster: Rep_2158_CGC11
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_2158
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2158_c_0 | Rep_2158_c_0_601 | 710962 | 711987 | + | 3.A.1.1.34 |
| TC | Rep_2158_c_0 | Rep_2158_c_0_602 | 711989 | 712873 | + | 3.A.1.1.47 |
| pfam | Rep_2158_c_0 | Rep_2158_c_0_603 | 712904 | 714073 | + | GlcNAc_2-epim | Beta-AFase-like_GH127_cat |
| CAZyme | Rep_2158_c_0 | Rep_2158_c_0_604 | 714115 | 715293 | + | GH130_1 |
| CAZyme | Rep_2158_c_0 | Rep_2158_c_0_605 | 715422 | 716447 | + | GH130_2 |
Gene ID: Rep_2158_c_0_601
Type: TC
Location: 710962 - 711987 (+)
Type: TC
Location: 710962 - 711987 (+)
Gene ID: Rep_2158_c_0_602
Type: TC
Location: 711989 - 712873 (+)
Type: TC
Location: 711989 - 712873 (+)
Gene ID: Rep_2158_c_0_603
Type: pfam
Location: 712904 - 714073 (+)
Type: pfam
Location: 712904 - 714073 (+)
Gene ID: Rep_2158_c_0_604
Type: CAZyme
Location: 714115 - 715293 (+)
Type: CAZyme
Location: 714115 - 715293 (+)
Gene ID: Rep_2158_c_0_605
Type: CAZyme
Location: 715422 - 716447 (+)
Type: CAZyme
Location: 715422 - 716447 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus eutactus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2158_c_0_602 | vegetarian > vegan | 1.08521 | 0.00516 |
| Rep_2158_c_0_604 | vegetarian > vegan | 1.50628 | 0.00516 |