Cluster: Rep_2157_CGC34
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_2157
- CGC Family ID: CGCFAM_00334
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2157_c_0 | Rep_2157_c_0_2626 | 2883862 | 2885256 | - | 2.A.2.3.3 |
| CAZyme | Rep_2157_c_0 | Rep_2157_c_0_2627 | 2885413 | 2888454 | - | GH2 |
| TF | Rep_2157_c_0 | Rep_2157_c_0_2628 | 2888815 | 2889681 | + | HTH_AraC | HTH_AraC |
| TC | Rep_2157_c_0 | Rep_2157_c_0_2629 | 2889964 | 2891706 | - | 3.A.1.106.2 |
| CAZyme | Rep_2157_c_0 | Rep_2157_c_0_2630 | 2891753 | 2892709 | - | GH113 |
Gene ID: Rep_2157_c_0_2626
Type: TC
Location: 2883862 - 2885256 (-)
Type: TC
Location: 2883862 - 2885256 (-)
Gene ID: Rep_2157_c_0_2627
Type: CAZyme
Location: 2885413 - 2888454 (-)
Type: CAZyme
Location: 2885413 - 2888454 (-)
Gene ID: Rep_2157_c_0_2628
Type: TF
Location: 2888815 - 2889681 (+)
Type: TF
Location: 2888815 - 2889681 (+)
Gene ID: Rep_2157_c_0_2629
Type: TC
Location: 2889964 - 2891706 (-)
Type: TC
Location: 2889964 - 2891706 (-)
Gene ID: Rep_2157_c_0_2630
Type: CAZyme
Location: 2891753 - 2892709 (-)
Type: CAZyme
Location: 2891753 - 2892709 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus aceti
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2157_c_0_2629 | vegetarian > omnivore | 1.18429 | 0.02705 |
| Rep_2157_c_0_2629 | vegetarian > vegan | 1.86956 | 0.00364 |
| Rep_2157_c_0_2630 | vegetarian > omnivore | 1.20702 | 0.03198 |
| Rep_2157_c_0_2630 | vegetarian > vegan | 1.66023 | 0.01692 |