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Cluster: Rep_2157_CGC32

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2157_c_0 Rep_2157_c_0_2493 2759028 2760527 - GH77
TC Rep_2157_c_0 Rep_2157_c_0_2494 2760610 2761503 - 3.A.1.1.45
TC Rep_2157_c_0 Rep_2157_c_0_2495 2761503 2762345 - 3.A.1.1.45
TC Rep_2157_c_0 Rep_2157_c_0_2496 2762612 2763949 - 3.A.1.1.45
pfam Rep_2157_c_0 Rep_2157_c_0_2497 2764245 2764679 + Cupin_1 | Cupin_2
STP Rep_2157_c_0 Rep_2157_c_0_2498 2764882 2765049 - HATPase_c
TC Rep_2157_c_0 Rep_2157_c_0_2499 2765253 2766032 - 3.A.1.3.14
TC Rep_2157_c_0 Rep_2157_c_0_2500 2766134 2766820 - 3.A.1.3.14
STP Rep_2157_c_0 Rep_2157_c_0_2501 2766872 2767669 - SBP_bac_3
TC Rep_2157_c_0 Rep_2157_c_0_2502 2767902 2769086 - 2.A.4.7.6
Gene ID: Rep_2157_c_0_2493
Type: CAZyme
Location: 2759028 - 2760527 (-)
Gene ID: Rep_2157_c_0_2494
Type: TC
Location: 2760610 - 2761503 (-)
Gene ID: Rep_2157_c_0_2495
Type: TC
Location: 2761503 - 2762345 (-)
Gene ID: Rep_2157_c_0_2496
Type: TC
Location: 2762612 - 2763949 (-)
Gene ID: Rep_2157_c_0_2497
Type: pfam
Location: 2764245 - 2764679 (+)
Gene ID: Rep_2157_c_0_2498
Type: STP
Location: 2764882 - 2765049 (-)
Gene ID: Rep_2157_c_0_2499
Type: TC
Location: 2765253 - 2766032 (-)
Gene ID: Rep_2157_c_0_2500
Type: TC
Location: 2766134 - 2766820 (-)
Gene ID: Rep_2157_c_0_2501
Type: STP
Location: 2766872 - 2767669 (-)
Gene ID: Rep_2157_c_0_2502
Type: TC
Location: 2767902 - 2769086 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2157_c_0_2499 vegan > omnivore 1.30717 0.02106

🧭 Explore Read Mapping of CGC

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