Cluster: Rep_2157_CGC28
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_2157
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2157_c_0 | Rep_2157_c_0_2204 | 2478829 | 2479557 | + | GT2 |
| pfam | Rep_2157_c_0 | Rep_2157_c_0_2205 | 2479621 | 2480844 | + | UDPGP |
| pfam | Rep_2157_c_0 | Rep_2157_c_0_2206 | 2480902 | 2481114 | - | RHH_1 | HicB |
| CAZyme | Rep_2157_c_0 | Rep_2157_c_0_2207 | 2481145 | 2481891 | - | GT2 |
| TC | Rep_2157_c_0 | Rep_2157_c_0_2208 | 2481923 | 2483404 | - | 9.B.18.1.3 |
Gene ID: Rep_2157_c_0_2204
Type: CAZyme
Location: 2478829 - 2479557 (+)
Type: CAZyme
Location: 2478829 - 2479557 (+)
Gene ID: Rep_2157_c_0_2205
Type: pfam
Location: 2479621 - 2480844 (+)
Type: pfam
Location: 2479621 - 2480844 (+)
Gene ID: Rep_2157_c_0_2206
Type: pfam
Location: 2480902 - 2481114 (-)
Type: pfam
Location: 2480902 - 2481114 (-)
Gene ID: Rep_2157_c_0_2207
Type: CAZyme
Location: 2481145 - 2481891 (-)
Type: CAZyme
Location: 2481145 - 2481891 (-)
Gene ID: Rep_2157_c_0_2208
Type: TC
Location: 2481923 - 2483404 (-)
Type: TC
Location: 2481923 - 2483404 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus aceti
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.