Cluster: Rep_2157_CGC25
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2157
- CGC Family ID: CGCFAM_05894
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2157_c_0 | Rep_2157_c_0_1995 | 2228453 | 2229343 | - | 3.A.1.132.7 |
| TC | Rep_2157_c_0 | Rep_2157_c_0_1996 | 2229321 | 2230286 | - | 3.A.1.105.9 |
| NULL(UNKNOWN) | Rep_2157_c_0 | Rep_2157_c_0_1997 | 2230286 | 2232595 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_2157_c_0 | Rep_2157_c_0_1998 | 2232776 | 2233738 | - | cobW | DUF1980_C |
| TC | Rep_2157_c_0 | Rep_2157_c_0_1999 | 2233767 | 2234867 | - | 9.B.10.1.1 |
| TC | Rep_2157_c_0 | Rep_2157_c_0_2000 | 2235007 | 2235915 | - | 1.A.23.2.2 |
| CAZyme | Rep_2157_c_0 | Rep_2157_c_0_2001 | 2235931 | 2237814 | - | GH13_9 |
Gene ID: Rep_2157_c_0_1995
Type: TC
Location: 2228453 - 2229343 (-)
Type: TC
Location: 2228453 - 2229343 (-)
Gene ID: Rep_2157_c_0_1996
Type: TC
Location: 2229321 - 2230286 (-)
Type: TC
Location: 2229321 - 2230286 (-)
Gene ID: Rep_2157_c_0_1997
Type:
Location: 2230286 - 2232595 (-)
Type:
Location: 2230286 - 2232595 (-)
Gene ID: Rep_2157_c_0_1998
Type: pfam
Location: 2232776 - 2233738 (-)
Type: pfam
Location: 2232776 - 2233738 (-)
Gene ID: Rep_2157_c_0_1999
Type: TC
Location: 2233767 - 2234867 (-)
Type: TC
Location: 2233767 - 2234867 (-)
Gene ID: Rep_2157_c_0_2000
Type: TC
Location: 2235007 - 2235915 (-)
Type: TC
Location: 2235007 - 2235915 (-)
Gene ID: Rep_2157_c_0_2001
Type: CAZyme
Location: 2235931 - 2237814 (-)
Type: CAZyme
Location: 2235931 - 2237814 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus aceti
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.