Cluster: Rep_2157_CGC23
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2157
- CGC Family ID: CGCFAM_03427
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2157_c_0 | Rep_2157_c_0_1909 | 2147135 | 2148694 | + | 4.C.1.1.14 |
| STP | Rep_2157_c_0 | Rep_2157_c_0_1910 | 2148789 | 2149367 | + | TetR_N |
| CAZyme | Rep_2157_c_0 | Rep_2157_c_0_1911 | 2149512 | 2150981 | - | GH51_1 |
Gene ID: Rep_2157_c_0_1909
Type: TC
Location: 2147135 - 2148694 (+)
Type: TC
Location: 2147135 - 2148694 (+)
Gene ID: Rep_2157_c_0_1910
Type: STP
Location: 2148789 - 2149367 (+)
Type: STP
Location: 2148789 - 2149367 (+)
Gene ID: Rep_2157_c_0_1911
Type: CAZyme
Location: 2149512 - 2150981 (-)
Type: CAZyme
Location: 2149512 - 2150981 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus aceti
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2157_c_0_1911 | vegetarian > omnivore | 1.05649 | 0.03198 |