Cluster: Rep_2157_CGC18
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2157
- CGC Family ID: CGCFAM_00737
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2157_c_0 | Rep_2157_c_0_1279 | 1425223 | 1427559 | + | 3.A.7.7.1 |
| CAZyme | Rep_2157_c_0 | Rep_2157_c_0_1280 | 1427591 | 1429522 | + | GH23 |
| TF | Rep_2157_c_0 | Rep_2157_c_0_1281 | 1429657 | 1430013 | - | HTH_3 |
| TC | Rep_2157_c_0 | Rep_2157_c_0_1282 | 1430602 | 1431384 | + | 3.A.1.134.12 |
Gene ID: Rep_2157_c_0_1279
Type: TC
Location: 1425223 - 1427559 (+)
Type: TC
Location: 1425223 - 1427559 (+)
Gene ID: Rep_2157_c_0_1280
Type: CAZyme
Location: 1427591 - 1429522 (+)
Type: CAZyme
Location: 1427591 - 1429522 (+)
Gene ID: Rep_2157_c_0_1281
Type: TF
Location: 1429657 - 1430013 (-)
Type: TF
Location: 1429657 - 1430013 (-)
Gene ID: Rep_2157_c_0_1282
Type: TC
Location: 1430602 - 1431384 (+)
Type: TC
Location: 1430602 - 1431384 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus aceti
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2157_c_0_1281 | vegetarian > vegan | 1.05323 | 0.02401 |