Cluster: Rep_2157_CGC17
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_2157
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2157_c_0 | Rep_2157_c_0_1041 | 1142469 | 1143917 | + | GH1 |
| NULL(UNKNOWN) | Rep_2157_c_0 | Rep_2157_c_0_1042 | 1144125 | 1145573 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_2157_c_0 | Rep_2157_c_0_1043 | 1145705 | 1148281 | + | 3.A.9.1.2 |
| NULL(UNKNOWN) | Rep_2157_c_0 | Rep_2157_c_0_1044 | 1148428 | 1149369 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_2157_c_0 | Rep_2157_c_0_1045 | 1149395 | 1150357 | + | GT2 |
Gene ID: Rep_2157_c_0_1041
Type: CAZyme
Location: 1142469 - 1143917 (+)
Type: CAZyme
Location: 1142469 - 1143917 (+)
Gene ID: Rep_2157_c_0_1042
Type:
Location: 1144125 - 1145573 (+)
Type:
Location: 1144125 - 1145573 (+)
Gene ID: Rep_2157_c_0_1043
Type: TC
Location: 1145705 - 1148281 (+)
Type: TC
Location: 1145705 - 1148281 (+)
Gene ID: Rep_2157_c_0_1044
Type:
Location: 1148428 - 1149369 (+)
Type:
Location: 1148428 - 1149369 (+)
Gene ID: Rep_2157_c_0_1045
Type: CAZyme
Location: 1149395 - 1150357 (+)
Type: CAZyme
Location: 1149395 - 1150357 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus aceti
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2157_c_0_1042 | vegetarian > vegan | 1.16458 | 0.02176 |
| Rep_2157_c_0_1044 | vegetarian > vegan | 1.09422 | 0.02401 |