Cluster: Rep_2157_CGC16
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_2157
- CGC Family ID: CGCFAM_09965
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2157_c_0 | Rep_2157_c_0_962 | 1055836 | 1056894 | + | 4.D.2.1.5 |
| NULL(UNKNOWN) | Rep_2157_c_0 | Rep_2157_c_0_963 | 1056857 | 1057153 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| STP | Rep_2157_c_0 | Rep_2157_c_0_964 | 1057246 | 1059264 | + | HATPase_c | HisKA | Response_reg |
| TC | Rep_2157_c_0 | Rep_2157_c_0_965 | 1059393 | 1060715 | - | 2.A.22.5.2 |
| pfam | Rep_2157_c_0 | Rep_2157_c_0_966 | 1060955 | 1061467 | + | UDG |
| pfam | Rep_2157_c_0 | Rep_2157_c_0_967 | 1061625 | 1062461 | + | BacA |
| CAZyme | Rep_2157_c_0 | Rep_2157_c_0_968 | 1062579 | 1063727 | + | GT2 |
| CAZyme | Rep_2157_c_0 | Rep_2157_c_0_969 | 1063738 | 1064718 | + | GT2 |
| pfam | Rep_2157_c_0 | Rep_2157_c_0_970 | 1064781 | 1065635 | - | ROK |
| NULL(UNKNOWN) | Rep_2157_c_0 | Rep_2157_c_0_971 | 1065863 | 1065967 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_2157_c_0 | Rep_2157_c_0_972 | 1066128 | 1067507 | + | 2.A.66.1.33 |
Gene ID: Rep_2157_c_0_962
Type: TC
Location: 1055836 - 1056894 (+)
Type: TC
Location: 1055836 - 1056894 (+)
Gene ID: Rep_2157_c_0_963
Type:
Location: 1056857 - 1057153 (+)
Type:
Location: 1056857 - 1057153 (+)
Gene ID: Rep_2157_c_0_964
Type: STP
Location: 1057246 - 1059264 (+)
Type: STP
Location: 1057246 - 1059264 (+)
Gene ID: Rep_2157_c_0_965
Type: TC
Location: 1059393 - 1060715 (-)
Type: TC
Location: 1059393 - 1060715 (-)
Gene ID: Rep_2157_c_0_966
Type: pfam
Location: 1060955 - 1061467 (+)
Type: pfam
Location: 1060955 - 1061467 (+)
Gene ID: Rep_2157_c_0_967
Type: pfam
Location: 1061625 - 1062461 (+)
Type: pfam
Location: 1061625 - 1062461 (+)
Gene ID: Rep_2157_c_0_968
Type: CAZyme
Location: 1062579 - 1063727 (+)
Type: CAZyme
Location: 1062579 - 1063727 (+)
Gene ID: Rep_2157_c_0_969
Type: CAZyme
Location: 1063738 - 1064718 (+)
Type: CAZyme
Location: 1063738 - 1064718 (+)
Gene ID: Rep_2157_c_0_970
Type: pfam
Location: 1064781 - 1065635 (-)
Type: pfam
Location: 1064781 - 1065635 (-)
Gene ID: Rep_2157_c_0_971
Type:
Location: 1065863 - 1065967 (+)
Type:
Location: 1065863 - 1065967 (+)
Gene ID: Rep_2157_c_0_972
Type: TC
Location: 1066128 - 1067507 (+)
Type: TC
Location: 1066128 - 1067507 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus aceti
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2157_c_0_971 | vegetarian > vegan | 1.33852 | 0.02401 |