Cluster: Rep_2157_CGC11
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_2157
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2157_c_0 | Rep_2157_c_0_549 | 613779 | 614804 | + | 3.A.1.1.34 |
| TC | Rep_2157_c_0 | Rep_2157_c_0_550 | 614806 | 615690 | + | 3.A.1.1.47 |
| pfam | Rep_2157_c_0 | Rep_2157_c_0_551 | 615721 | 616890 | + | GlcNAc_2-epim | Beta-AFase-like_GH127_cat |
| CAZyme | Rep_2157_c_0 | Rep_2157_c_0_552 | 616932 | 618110 | + | GH130_1 |
| CAZyme | Rep_2157_c_0 | Rep_2157_c_0_553 | 618240 | 619265 | + | GH130_2 |
Gene ID: Rep_2157_c_0_549
Type: TC
Location: 613779 - 614804 (+)
Type: TC
Location: 613779 - 614804 (+)
Gene ID: Rep_2157_c_0_550
Type: TC
Location: 614806 - 615690 (+)
Type: TC
Location: 614806 - 615690 (+)
Gene ID: Rep_2157_c_0_551
Type: pfam
Location: 615721 - 616890 (+)
Type: pfam
Location: 615721 - 616890 (+)
Gene ID: Rep_2157_c_0_552
Type: CAZyme
Location: 616932 - 618110 (+)
Type: CAZyme
Location: 616932 - 618110 (+)
Gene ID: Rep_2157_c_0_553
Type: CAZyme
Location: 618240 - 619265 (+)
Type: CAZyme
Location: 618240 - 619265 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus aceti
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2157_c_0_550 | vegetarian > vegan | 1.04309 | 0.02176 |
| Rep_2157_c_0_552 | vegetarian > vegan | 1.31915 | 0.01056 |