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Cluster: Rep_2156_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2156_c_9 Rep_2156_c_9_339 374615 376360 - 2.A.21.9.2
pfam Rep_2156_c_9 Rep_2156_c_9_340 376532 379786 - GtrA_DPMS_TM | YfhO
CAZyme Rep_2156_c_9 Rep_2156_c_9_341 379949 382240 - CBM4 | GH9
pfam Rep_2156_c_9 Rep_2156_c_9_342 382242 383018 - His_biosynth
TC Rep_2156_c_9 Rep_2156_c_9_343 383196 384608 + 3.A.24.3.1
TC Rep_2156_c_9 Rep_2156_c_9_344 384753 385421 + 9.B.28.1.3
TC Rep_2156_c_9 Rep_2156_c_9_345 385423 386112 - 3.A.11.1.4
TC Rep_2156_c_9 Rep_2156_c_9_346 386151 388478 - 3.A.7.16.1
TC Rep_2156_c_9 Rep_2156_c_9_347 388505 389497 - 9.B.157.1.1
Gene ID: Rep_2156_c_9_339
Type: TC
Location: 374615 - 376360 (-)
Gene ID: Rep_2156_c_9_340
Type: pfam
Location: 376532 - 379786 (-)
Gene ID: Rep_2156_c_9_341
Type: CAZyme
Location: 379949 - 382240 (-)
Gene ID: Rep_2156_c_9_342
Type: pfam
Location: 382242 - 383018 (-)
Gene ID: Rep_2156_c_9_343
Type: TC
Location: 383196 - 384608 (+)
Gene ID: Rep_2156_c_9_344
Type: TC
Location: 384753 - 385421 (+)
Gene ID: Rep_2156_c_9_345
Type: TC
Location: 385423 - 386112 (-)
Gene ID: Rep_2156_c_9_346
Type: TC
Location: 386151 - 388478 (-)
Gene ID: Rep_2156_c_9_347
Type: TC
Location: 388505 - 389497 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2156_c_9_347 vegetarian > omnivore 1.18562 0.00560

🧭 Explore Read Mapping of CGC

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