Cluster: Rep_2156_CGC6
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_2156
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2156_c_9 | Rep_2156_c_9_92 | 105784 | 107250 | - | 2.A.2.1.1 |
| CAZyme | Rep_2156_c_9 | Rep_2156_c_9_93 | 107270 | 109687 | - | GH3 |
| TF | Rep_2156_c_9 | Rep_2156_c_9_94 | 109933 | 110691 | + | HTH_AraC |
| pfam | Rep_2156_c_9 | Rep_2156_c_9_95 | 110722 | 110895 | - | DUF6440 |
| CAZyme | Rep_2156_c_9 | Rep_2156_c_9_96 | 111122 | 111619 | - | GH166 |
Gene ID: Rep_2156_c_9_92
Type: TC
Location: 105784 - 107250 (-)
Type: TC
Location: 105784 - 107250 (-)
Gene ID: Rep_2156_c_9_93
Type: CAZyme
Location: 107270 - 109687 (-)
Type: CAZyme
Location: 107270 - 109687 (-)
Gene ID: Rep_2156_c_9_94
Type: TF
Location: 109933 - 110691 (+)
Type: TF
Location: 109933 - 110691 (+)
Gene ID: Rep_2156_c_9_95
Type: pfam
Location: 110722 - 110895 (-)
Type: pfam
Location: 110722 - 110895 (-)
Gene ID: Rep_2156_c_9_96
Type: CAZyme
Location: 111122 - 111619 (-)
Type: CAZyme
Location: 111122 - 111619 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus sp900548215
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2156_c_9_93 | vegetarian > omnivore | 1.20293 | 0.01915 |
| Rep_2156_c_9_94 | vegetarian > omnivore | 1.14320 | 0.01915 |
| Rep_2156_c_9_96 | vegetarian > omnivore | 1.30665 | 0.01915 |