Cluster: Rep_2156_CGC31
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2156
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2156_c_14 | Rep_2156_c_14_41 | 51332 | 51751 | - | 1.A.22.1.8 |
| pfam | Rep_2156_c_14 | Rep_2156_c_14_42 | 51896 | 53440 | - | Phosphodiest | Metalloenzyme | iPGM_N |
| pfam | Rep_2156_c_14 | Rep_2156_c_14_43 | 53740 | 54498 | - | Exo_endo_phos |
| CAZyme | Rep_2156_c_14 | Rep_2156_c_14_44 | 54859 | 58494 | - | CBM4 | CBM4 | CBM4 | GH16_3 |
Gene ID: Rep_2156_c_14_41
Type: TC
Location: 51332 - 51751 (-)
Type: TC
Location: 51332 - 51751 (-)
Gene ID: Rep_2156_c_14_42
Type: pfam
Location: 51896 - 53440 (-)
Type: pfam
Location: 51896 - 53440 (-)
Gene ID: Rep_2156_c_14_43
Type: pfam
Location: 53740 - 54498 (-)
Type: pfam
Location: 53740 - 54498 (-)
Gene ID: Rep_2156_c_14_44
Type: CAZyme
Location: 54859 - 58494 (-)
Type: CAZyme
Location: 54859 - 58494 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus sp900548215
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2156_c_14_43 | vegan > omnivore | 1.55573 | 0.04047 |
| Rep_2156_c_14_44 | vegetarian > vegan | 1.13198 | 0.02802 |