Cluster: Rep_2156_CGC26
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_2156
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2156_c_11 | Rep_2156_c_11_151 | 183534 | 184559 | + | 3.A.1.1.34 |
| TC | Rep_2156_c_11 | Rep_2156_c_11_152 | 184561 | 185445 | + | 3.A.1.1.47 |
| pfam | Rep_2156_c_11 | Rep_2156_c_11_153 | 185476 | 186645 | + | GlcNAc_2-epim | Beta-AFase-like_GH127_cat |
| CAZyme | Rep_2156_c_11 | Rep_2156_c_11_154 | 186687 | 187865 | + | GH130_1 |
| CAZyme | Rep_2156_c_11 | Rep_2156_c_11_155 | 187994 | 189019 | + | GH130_2 |
Gene ID: Rep_2156_c_11_151
Type: TC
Location: 183534 - 184559 (+)
Type: TC
Location: 183534 - 184559 (+)
Gene ID: Rep_2156_c_11_152
Type: TC
Location: 184561 - 185445 (+)
Type: TC
Location: 184561 - 185445 (+)
Gene ID: Rep_2156_c_11_153
Type: pfam
Location: 185476 - 186645 (+)
Type: pfam
Location: 185476 - 186645 (+)
Gene ID: Rep_2156_c_11_154
Type: CAZyme
Location: 186687 - 187865 (+)
Type: CAZyme
Location: 186687 - 187865 (+)
Gene ID: Rep_2156_c_11_155
Type: CAZyme
Location: 187994 - 189019 (+)
Type: CAZyme
Location: 187994 - 189019 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus sp900548215
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2156_c_11_152 | vegetarian > vegan | 1.07932 | 0.02802 |
| Rep_2156_c_11_154 | vegetarian > vegan | 1.26519 | 0.02695 |