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Cluster: Rep_2156_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2156_c_11 Rep_2156_c_11_19 22717 23505 + GT2
CAZyme Rep_2156_c_11 Rep_2156_c_11_20 23498 24529 + GT2
TC Rep_2156_c_11 Rep_2156_c_11_21 24556 25344 + 3.A.1.103.4
TC Rep_2156_c_11 Rep_2156_c_11_22 25356 26219 + 3.A.1.103.5
CAZyme Rep_2156_c_11 Rep_2156_c_11_23 26289 28121 + GT2
Gene ID: Rep_2156_c_11_19
Type: CAZyme
Location: 22717 - 23505 (+)
Gene ID: Rep_2156_c_11_20
Type: CAZyme
Location: 23498 - 24529 (+)
Gene ID: Rep_2156_c_11_21
Type: TC
Location: 24556 - 25344 (+)
Gene ID: Rep_2156_c_11_22
Type: TC
Location: 25356 - 26219 (+)
Gene ID: Rep_2156_c_11_23
Type: CAZyme
Location: 26289 - 28121 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2156_c_11_20 vegetarian > omnivore 1.76363 0.01233

🧭 Explore Read Mapping of CGC

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