Cluster: Rep_2156_CGC2
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2156
- CGC Family ID: CGCFAM_10206
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2156_c_5 | Rep_2156_c_5_2 | 1129 | 1632 | + | 3.A.1.2.1 |
| TC | Rep_2156_c_5 | Rep_2156_c_5_3 | 1625 | 1828 | + | 3.A.1.2.20 |
| TC | Rep_2156_c_5 | Rep_2156_c_5_4 | 1839 | 2141 | + | 3.A.1.2.20 |
| TC | Rep_2156_c_5 | Rep_2156_c_5_5 | 2352 | 2993 | + | 3.A.1.2.5 |
| NULL(UNKNOWN) | Rep_2156_c_5 | Rep_2156_c_5_6 | 3020 | 3250 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_2156_c_5 | Rep_2156_c_5_7 | 3283 | 3663 | + | 3.A.1.2.1 |
| pfam | Rep_2156_c_5 | Rep_2156_c_5_8 | 3668 | 4150 | + | Glyco_hydro_32N |
| CAZyme | Rep_2156_c_5 | Rep_2156_c_5_9 | 4116 | 4751 | + | GH32 |
Gene ID: Rep_2156_c_5_2
Type: TC
Location: 1129 - 1632 (+)
Type: TC
Location: 1129 - 1632 (+)
Gene ID: Rep_2156_c_5_3
Type: TC
Location: 1625 - 1828 (+)
Type: TC
Location: 1625 - 1828 (+)
Gene ID: Rep_2156_c_5_4
Type: TC
Location: 1839 - 2141 (+)
Type: TC
Location: 1839 - 2141 (+)
Gene ID: Rep_2156_c_5_5
Type: TC
Location: 2352 - 2993 (+)
Type: TC
Location: 2352 - 2993 (+)
Gene ID: Rep_2156_c_5_6
Type:
Location: 3020 - 3250 (+)
Type:
Location: 3020 - 3250 (+)
Gene ID: Rep_2156_c_5_7
Type: TC
Location: 3283 - 3663 (+)
Type: TC
Location: 3283 - 3663 (+)
Gene ID: Rep_2156_c_5_8
Type: pfam
Location: 3668 - 4150 (+)
Type: pfam
Location: 3668 - 4150 (+)
Gene ID: Rep_2156_c_5_9
Type: CAZyme
Location: 4116 - 4751 (+)
Type: CAZyme
Location: 4116 - 4751 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus sp900548215
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2156_c_5_2 | vegetarian > omnivore | 1.21001 | 0.01915 |
| Rep_2156_c_5_3 | vegetarian > omnivore | 1.03143 | 0.01915 |
| Rep_2156_c_5_5 | vegan > omnivore | 1.11823 | 0.04047 |
| Rep_2156_c_5_5 | vegetarian > omnivore | 1.44836 | 0.01915 |
| Rep_2156_c_5_6 | vegan > omnivore | 1.60418 | 0.04047 |
| Rep_2156_c_5_6 | vegetarian > omnivore | 1.96725 | 0.01915 |
| Rep_2156_c_5_7 | vegetarian > omnivore | 1.42092 | 0.01915 |
| Rep_2156_c_5_7 | vegan > omnivore | 1.36123 | 0.04047 |