Cluster: Rep_2156_CGC13
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_2156
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2156_c_9 | Rep_2156_c_9_558 | 677638 | 679356 | + | 2.A.25.1.3 |
| TC | Rep_2156_c_9 | Rep_2156_c_9_559 | 679561 | 681321 | + | 1.A.33.1.4 |
| NULL(UNKNOWN) | Rep_2156_c_9 | Rep_2156_c_9_560 | 681457 | 681852 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_2156_c_9 | Rep_2156_c_9_561 | 681907 | 682830 | + | 1.E.12.1.3 |
| pfam | Rep_2156_c_9 | Rep_2156_c_9_562 | 683018 | 683812 | + | DnaJ |
| CAZyme | Rep_2156_c_9 | Rep_2156_c_9_563 | 684366 | 686813 | + | GT35 |
| CAZyme | Rep_2156_c_9 | Rep_2156_c_9_564 | 687000 | 688070 | + | GH5_2 |
Gene ID: Rep_2156_c_9_558
Type: TC
Location: 677638 - 679356 (+)
Type: TC
Location: 677638 - 679356 (+)
Gene ID: Rep_2156_c_9_559
Type: TC
Location: 679561 - 681321 (+)
Type: TC
Location: 679561 - 681321 (+)
Gene ID: Rep_2156_c_9_560
Type:
Location: 681457 - 681852 (+)
Type:
Location: 681457 - 681852 (+)
Gene ID: Rep_2156_c_9_561
Type: TC
Location: 681907 - 682830 (+)
Type: TC
Location: 681907 - 682830 (+)
Gene ID: Rep_2156_c_9_562
Type: pfam
Location: 683018 - 683812 (+)
Type: pfam
Location: 683018 - 683812 (+)
Gene ID: Rep_2156_c_9_563
Type: CAZyme
Location: 684366 - 686813 (+)
Type: CAZyme
Location: 684366 - 686813 (+)
Gene ID: Rep_2156_c_9_564
Type: CAZyme
Location: 687000 - 688070 (+)
Type: CAZyme
Location: 687000 - 688070 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus sp900548215
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.