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Cluster: Rep_2155_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2155_c_0 Rep_2155_c_0_81 69030 70373 + 2.A.66.1.33
STP Rep_2155_c_0 Rep_2155_c_0_82 70571 71368 + PfkB
TF Rep_2155_c_0 Rep_2155_c_0_83 71713 72423 - HTH_AraC
CAZyme Rep_2155_c_0 Rep_2155_c_0_84 72558 74816 + GT35
TC Rep_2155_c_0 Rep_2155_c_0_85 75080 76411 + 3.A.1.1.45
TC Rep_2155_c_0 Rep_2155_c_0_86 76537 77379 + 3.A.1.1.45
TC Rep_2155_c_0 Rep_2155_c_0_87 77379 78218 + 3.A.1.1.45
TF Rep_2155_c_0 Rep_2155_c_0_88 78251 79255 + LacI
CAZyme Rep_2155_c_0 Rep_2155_c_0_89 79288 80784 + GH77
NULL(UNKNOWN) Rep_2155_c_0 Rep_2155_c_0_90 80878 81051 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_2155_c_0 Rep_2155_c_0_91 81084 82112 + 9.B.34.1.3
Gene ID: Rep_2155_c_0_81
Type: TC
Location: 69030 - 70373 (+)
Gene ID: Rep_2155_c_0_82
Type: STP
Location: 70571 - 71368 (+)
Gene ID: Rep_2155_c_0_83
Type: TF
Location: 71713 - 72423 (-)
Gene ID: Rep_2155_c_0_84
Type: CAZyme
Location: 72558 - 74816 (+)
Gene ID: Rep_2155_c_0_85
Type: TC
Location: 75080 - 76411 (+)
Gene ID: Rep_2155_c_0_86
Type: TC
Location: 76537 - 77379 (+)
Gene ID: Rep_2155_c_0_87
Type: TC
Location: 77379 - 78218 (+)
Gene ID: Rep_2155_c_0_88
Type: TF
Location: 78251 - 79255 (+)
Gene ID: Rep_2155_c_0_89
Type: CAZyme
Location: 79288 - 80784 (+)
Gene ID: Rep_2155_c_0_90
Type:
Location: 80878 - 81051 (+)
Gene ID: Rep_2155_c_0_91
Type: TC
Location: 81084 - 82112 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2155_c_0_82 vegan > omnivore 2.22003 0.00969

🧭 Explore Read Mapping of CGC

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