Cluster: Rep_2155_CGC12
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2155
- CGC Family ID: CGCFAM_01231
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2155_c_0 | Rep_2155_c_0_1873 | 2072280 | 2074043 | + | 1.A.33.1.4 |
| NULL(UNKNOWN) | Rep_2155_c_0 | Rep_2155_c_0_1874 | 2074043 | 2074438 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_2155_c_0 | Rep_2155_c_0_1875 | 2074450 | 2074893 | + | 1.E.12.1.3 |
| pfam | Rep_2155_c_0 | Rep_2155_c_0_1876 | 2074871 | 2075389 | + | DUF5685 |
| pfam | Rep_2155_c_0 | Rep_2155_c_0_1877 | 2075459 | 2076250 | + | DnaJ |
| CAZyme | Rep_2155_c_0 | Rep_2155_c_0_1878 | 2076492 | 2078936 | + | GT35 |
Gene ID: Rep_2155_c_0_1873
Type: TC
Location: 2072280 - 2074043 (+)
Type: TC
Location: 2072280 - 2074043 (+)
Gene ID: Rep_2155_c_0_1874
Type:
Location: 2074043 - 2074438 (+)
Type:
Location: 2074043 - 2074438 (+)
Gene ID: Rep_2155_c_0_1875
Type: TC
Location: 2074450 - 2074893 (+)
Type: TC
Location: 2074450 - 2074893 (+)
Gene ID: Rep_2155_c_0_1876
Type: pfam
Location: 2074871 - 2075389 (+)
Type: pfam
Location: 2074871 - 2075389 (+)
Gene ID: Rep_2155_c_0_1877
Type: pfam
Location: 2075459 - 2076250 (+)
Type: pfam
Location: 2075459 - 2076250 (+)
Gene ID: Rep_2155_c_0_1878
Type: CAZyme
Location: 2076492 - 2078936 (+)
Type: CAZyme
Location: 2076492 - 2078936 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus sp000433075
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.