Cluster: Rep_2155_CGC10
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_2155
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2155_c_0 | Rep_2155_c_0_1547 | 1697392 | 1698741 | - | 2.A.40.2.1 |
| TC | Rep_2155_c_0 | Rep_2155_c_0_1548 | 1698836 | 1701184 | - | 9.A.8.1.6 |
| STP | Rep_2155_c_0 | Rep_2155_c_0_1549 | 1701293 | 1701874 | - | Pribosyltran |
| pfam | Rep_2155_c_0 | Rep_2155_c_0_1550 | 1702051 | 1704600 | - | FtsX | FtsX | MacB_PCD | MacB_PCD |
| TC | Rep_2155_c_0 | Rep_2155_c_0_1551 | 1704608 | 1705312 | - | 3.A.1.122.7 |
| pfam | Rep_2155_c_0 | Rep_2155_c_0_1552 | 1705586 | 1706155 | - | DUF6553 |
| TC | Rep_2155_c_0 | Rep_2155_c_0_1553 | 1706215 | 1707261 | - | 3.A.1.2.3 |
| STP | Rep_2155_c_0 | Rep_2155_c_0_1554 | 1707254 | 1708258 | - | Peripla_BP_1 |
| TC | Rep_2155_c_0 | Rep_2155_c_0_1555 | 1708245 | 1710137 | - | 8.A.59.2.1 |
| TF | Rep_2155_c_0 | Rep_2155_c_0_1556 | 1710168 | 1711772 | - | HTH_AraC | HTH_AraC |
| TC | Rep_2155_c_0 | Rep_2155_c_0_1557 | 1712387 | 1714039 | - | 3.A.1.2.3 |
| TC | Rep_2155_c_0 | Rep_2155_c_0_1558 | 1714058 | 1715566 | - | 3.A.1.2.3 |
| pfam | Rep_2155_c_0 | Rep_2155_c_0_1559 | 1715657 | 1716931 | - | Peripla_BP_4 | Peripla_BP_7 |
| pfam | Rep_2155_c_0 | Rep_2155_c_0_1560 | 1717336 | 1717980 | - | Hydrolase | HAD | Hydrolase_like | HAD_2 |
| TC | Rep_2155_c_0 | Rep_2155_c_0_1561 | 1718155 | 1719498 | + | 2.A.66.1.33 |
| CAZyme | Rep_2155_c_0 | Rep_2155_c_0_1562 | 1719705 | 1722119 | - | GH94 |
| CAZyme | Rep_2155_c_0 | Rep_2155_c_0_1563 | 1722222 | 1724930 | - | GH94 |
Gene ID: Rep_2155_c_0_1547
Type: TC
Location: 1697392 - 1698741 (-)
Type: TC
Location: 1697392 - 1698741 (-)
Gene ID: Rep_2155_c_0_1548
Type: TC
Location: 1698836 - 1701184 (-)
Type: TC
Location: 1698836 - 1701184 (-)
Gene ID: Rep_2155_c_0_1549
Type: STP
Location: 1701293 - 1701874 (-)
Type: STP
Location: 1701293 - 1701874 (-)
Gene ID: Rep_2155_c_0_1550
Type: pfam
Location: 1702051 - 1704600 (-)
Type: pfam
Location: 1702051 - 1704600 (-)
Gene ID: Rep_2155_c_0_1551
Type: TC
Location: 1704608 - 1705312 (-)
Type: TC
Location: 1704608 - 1705312 (-)
Gene ID: Rep_2155_c_0_1552
Type: pfam
Location: 1705586 - 1706155 (-)
Type: pfam
Location: 1705586 - 1706155 (-)
Gene ID: Rep_2155_c_0_1553
Type: TC
Location: 1706215 - 1707261 (-)
Type: TC
Location: 1706215 - 1707261 (-)
Gene ID: Rep_2155_c_0_1554
Type: STP
Location: 1707254 - 1708258 (-)
Type: STP
Location: 1707254 - 1708258 (-)
Gene ID: Rep_2155_c_0_1555
Type: TC
Location: 1708245 - 1710137 (-)
Type: TC
Location: 1708245 - 1710137 (-)
Gene ID: Rep_2155_c_0_1556
Type: TF
Location: 1710168 - 1711772 (-)
Type: TF
Location: 1710168 - 1711772 (-)
Gene ID: Rep_2155_c_0_1557
Type: TC
Location: 1712387 - 1714039 (-)
Type: TC
Location: 1712387 - 1714039 (-)
Gene ID: Rep_2155_c_0_1558
Type: TC
Location: 1714058 - 1715566 (-)
Type: TC
Location: 1714058 - 1715566 (-)
Gene ID: Rep_2155_c_0_1559
Type: pfam
Location: 1715657 - 1716931 (-)
Type: pfam
Location: 1715657 - 1716931 (-)
Gene ID: Rep_2155_c_0_1560
Type: pfam
Location: 1717336 - 1717980 (-)
Type: pfam
Location: 1717336 - 1717980 (-)
Gene ID: Rep_2155_c_0_1561
Type: TC
Location: 1718155 - 1719498 (+)
Type: TC
Location: 1718155 - 1719498 (+)
Gene ID: Rep_2155_c_0_1562
Type: CAZyme
Location: 1719705 - 1722119 (-)
Type: CAZyme
Location: 1719705 - 1722119 (-)
Gene ID: Rep_2155_c_0_1563
Type: CAZyme
Location: 1722222 - 1724930 (-)
Type: CAZyme
Location: 1722222 - 1724930 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus sp000433075
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.