Cluster: Rep_2153_CGC5
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2153
- CGC Family ID: CGCFAM_09964
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2153_c_12 | Rep_2153_c_12_3 | 2139 | 3047 | + | 4.A.3.2.5 |
| STP | Rep_2153_c_12 | Rep_2153_c_12_4 | 3103 | 3636 | - | TetR_N |
| CAZyme | Rep_2153_c_12 | Rep_2153_c_12_5 | 3879 | 5756 | + | GH13_9 |
| NULL(UNKNOWN) | Rep_2153_c_12 | Rep_2153_c_12_6 | 6028 | 6555 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_2153_c_12 | Rep_2153_c_12_7 | 7074 | 8630 | + | 3.A.1.120.6 |
| TC | Rep_2153_c_12 | Rep_2153_c_12_8 | 8648 | 9361 | + | 2.A.115.2.9 |
| TC | Rep_2153_c_12 | Rep_2153_c_12_9 | 9368 | 10696 | - | 2.A.66.1.33 |
Gene ID: Rep_2153_c_12_3
Type: TC
Location: 2139 - 3047 (+)
Type: TC
Location: 2139 - 3047 (+)
Gene ID: Rep_2153_c_12_4
Type: STP
Location: 3103 - 3636 (-)
Type: STP
Location: 3103 - 3636 (-)
Gene ID: Rep_2153_c_12_5
Type: CAZyme
Location: 3879 - 5756 (+)
Type: CAZyme
Location: 3879 - 5756 (+)
Gene ID: Rep_2153_c_12_6
Type:
Location: 6028 - 6555 (+)
Type:
Location: 6028 - 6555 (+)
Gene ID: Rep_2153_c_12_7
Type: TC
Location: 7074 - 8630 (+)
Type: TC
Location: 7074 - 8630 (+)
Gene ID: Rep_2153_c_12_8
Type: TC
Location: 8648 - 9361 (+)
Type: TC
Location: 8648 - 9361 (+)
Gene ID: Rep_2153_c_12_9
Type: TC
Location: 9368 - 10696 (-)
Type: TC
Location: 9368 - 10696 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.