Cluster: Rep_2153_CGC4
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2153
- CGC Family ID: CGCFAM_00234
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2153_c_9 | Rep_2153_c_9_23 | 24551 | 25837 | - | GH3 |
| NULL(UNKNOWN) | Rep_2153_c_9 | Rep_2153_c_9_24 | 25999 | 26193 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_2153_c_9 | Rep_2153_c_9_25 | 26356 | 28998 | - | tRNA-synt_1 | Anticodon_1 | tRNA-synt_1g | tRNA-synt_1g | Val_tRNA-synt_C | tRNA-synt_1_2 |
| TC | Rep_2153_c_9 | Rep_2153_c_9_26 | 29722 | 30603 | - | 1.A.35.3.2 |
Gene ID: Rep_2153_c_9_23
Type: CAZyme
Location: 24551 - 25837 (-)
Type: CAZyme
Location: 24551 - 25837 (-)
Gene ID: Rep_2153_c_9_24
Type:
Location: 25999 - 26193 (-)
Type:
Location: 25999 - 26193 (-)
Gene ID: Rep_2153_c_9_25
Type: pfam
Location: 26356 - 28998 (-)
Type: pfam
Location: 26356 - 28998 (-)
Gene ID: Rep_2153_c_9_26
Type: TC
Location: 29722 - 30603 (-)
Type: TC
Location: 29722 - 30603 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.