Cluster: Rep_2153_CGC3
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2153
- CGC Family ID: CGCFAM_00973
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2153_c_9 | Rep_2153_c_9_1 | 3 | 788 | - | 3.A.1.1.45 |
| TC | Rep_2153_c_9 | Rep_2153_c_9_2 | 792 | 2081 | - | 3.A.1.1.28 |
| TF | Rep_2153_c_9 | Rep_2153_c_9_3 | 2366 | 3373 | - | LacI |
| TF | Rep_2153_c_9 | Rep_2153_c_9_4 | 3497 | 4423 | - | HTH_AraC | HTH_AraC |
| CAZyme | Rep_2153_c_9 | Rep_2153_c_9_5 | 4636 | 6618 | + | GH31_1 |
Gene ID: Rep_2153_c_9_1
Type: TC
Location: 3 - 788 (-)
Type: TC
Location: 3 - 788 (-)
Gene ID: Rep_2153_c_9_2
Type: TC
Location: 792 - 2081 (-)
Type: TC
Location: 792 - 2081 (-)
Gene ID: Rep_2153_c_9_3
Type: TF
Location: 2366 - 3373 (-)
Type: TF
Location: 2366 - 3373 (-)
Gene ID: Rep_2153_c_9_4
Type: TF
Location: 3497 - 4423 (-)
Type: TF
Location: 3497 - 4423 (-)
Gene ID: Rep_2153_c_9_5
Type: CAZyme
Location: 4636 - 6618 (+)
Type: CAZyme
Location: 4636 - 6618 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.