Cluster: Rep_2153_CGC24
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_2153
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2153_c_58 | Rep_2153_c_58_5 | 4685 | 6064 | + | 2.A.2.1.1 |
| CAZyme | Rep_2153_c_58 | Rep_2153_c_58_6 | 6066 | 8018 | + | GH42 |
| CAZyme | Rep_2153_c_58 | Rep_2153_c_58_7 | 8224 | 10926 | + | GH94 |
| CAZyme | Rep_2153_c_58 | Rep_2153_c_58_8 | 10941 | 13352 | + | GH94 |
| TF | Rep_2153_c_58 | Rep_2153_c_58_9 | 13357 | 14124 | - | HTH_AraC | HTH_AraC |
| TC | Rep_2153_c_58 | Rep_2153_c_58_10 | 14345 | 15079 | + | 1.C.113.1.3 |
| TF | Rep_2153_c_58 | Rep_2153_c_58_11 | 15098 | 15769 | + | Trans_reg_C |
| STP | Rep_2153_c_58 | Rep_2153_c_58_12 | 15826 | 16833 | + | HATPase_c |
| TC | Rep_2153_c_58 | Rep_2153_c_58_13 | 16973 | 17740 | + | 3.A.1.134.4 |
| TC | Rep_2153_c_58 | Rep_2153_c_58_14 | 17733 | 19784 | + | 3.A.1.134.9 |
| NULL(UNKNOWN) | Rep_2153_c_58 | Rep_2153_c_58_15 | 19892 | 20875 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | Rep_2153_c_58 | Rep_2153_c_58_16 | 20877 | 21839 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_2153_c_58 | Rep_2153_c_58_17 | 21854 | 22729 | - | 3.A.1.149.1 |
Gene ID: Rep_2153_c_58_5
Type: TC
Location: 4685 - 6064 (+)
Type: TC
Location: 4685 - 6064 (+)
Gene ID: Rep_2153_c_58_6
Type: CAZyme
Location: 6066 - 8018 (+)
Type: CAZyme
Location: 6066 - 8018 (+)
Gene ID: Rep_2153_c_58_7
Type: CAZyme
Location: 8224 - 10926 (+)
Type: CAZyme
Location: 8224 - 10926 (+)
Gene ID: Rep_2153_c_58_8
Type: CAZyme
Location: 10941 - 13352 (+)
Type: CAZyme
Location: 10941 - 13352 (+)
Gene ID: Rep_2153_c_58_9
Type: TF
Location: 13357 - 14124 (-)
Type: TF
Location: 13357 - 14124 (-)
Gene ID: Rep_2153_c_58_10
Type: TC
Location: 14345 - 15079 (+)
Type: TC
Location: 14345 - 15079 (+)
Gene ID: Rep_2153_c_58_11
Type: TF
Location: 15098 - 15769 (+)
Type: TF
Location: 15098 - 15769 (+)
Gene ID: Rep_2153_c_58_12
Type: STP
Location: 15826 - 16833 (+)
Type: STP
Location: 15826 - 16833 (+)
Gene ID: Rep_2153_c_58_13
Type: TC
Location: 16973 - 17740 (+)
Type: TC
Location: 16973 - 17740 (+)
Gene ID: Rep_2153_c_58_14
Type: TC
Location: 17733 - 19784 (+)
Type: TC
Location: 17733 - 19784 (+)
Gene ID: Rep_2153_c_58_15
Type:
Location: 19892 - 20875 (-)
Type:
Location: 19892 - 20875 (-)
Gene ID: Rep_2153_c_58_16
Type:
Location: 20877 - 21839 (-)
Type:
Location: 20877 - 21839 (-)
Gene ID: Rep_2153_c_58_17
Type: TC
Location: 21854 - 22729 (-)
Type: TC
Location: 21854 - 22729 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.