Cluster: Rep_2153_CGC22
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2153
- CGC Family ID: CGCFAM_02141
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2153_c_51 | Rep_2153_c_51_27 | 28778 | 30403 | - | 3.A.1.121.4 |
| NULL(UNKNOWN) | Rep_2153_c_51 | Rep_2153_c_51_28 | 30542 | 30727 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_2153_c_51 | Rep_2153_c_51_29 | 30923 | 32224 | + | 9.A.40.2.4 |
| pfam | Rep_2153_c_51 | Rep_2153_c_51_30 | 32279 | 32983 | + | DUF1836 |
| TF | Rep_2153_c_51 | Rep_2153_c_51_31 | 33078 | 33392 | - | Trp_repressor |
| CAZyme | Rep_2153_c_51 | Rep_2153_c_51_32 | 33409 | 34869 | - | GH13_5 |
Gene ID: Rep_2153_c_51_27
Type: TC
Location: 28778 - 30403 (-)
Type: TC
Location: 28778 - 30403 (-)
Gene ID: Rep_2153_c_51_28
Type:
Location: 30542 - 30727 (-)
Type:
Location: 30542 - 30727 (-)
Gene ID: Rep_2153_c_51_29
Type: TC
Location: 30923 - 32224 (+)
Type: TC
Location: 30923 - 32224 (+)
Gene ID: Rep_2153_c_51_30
Type: pfam
Location: 32279 - 32983 (+)
Type: pfam
Location: 32279 - 32983 (+)
Gene ID: Rep_2153_c_51_31
Type: TF
Location: 33078 - 33392 (-)
Type: TF
Location: 33078 - 33392 (-)
Gene ID: Rep_2153_c_51_32
Type: CAZyme
Location: 33409 - 34869 (-)
Type: CAZyme
Location: 33409 - 34869 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.