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Cluster: Rep_2153_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2153_c_1 Rep_2153_c_1_2 134 1177 + 3.A.1.1.28
CAZyme Rep_2153_c_1 Rep_2153_c_1_3 1269 3068 + GH13_4
CAZyme Rep_2153_c_1 Rep_2153_c_1_4 3114 5315 + GH36
STP Rep_2153_c_1 Rep_2153_c_1_5 5383 6378 + PfkB
pfam Rep_2153_c_1 Rep_2153_c_1_6 6555 8903 + FtsX | FtsX
TC Rep_2153_c_1 Rep_2153_c_1_7 8920 9687 + 3.A.1.134.12
Gene ID: Rep_2153_c_1_2
Type: TC
Location: 134 - 1177 (+)
Gene ID: Rep_2153_c_1_3
Type: CAZyme
Location: 1269 - 3068 (+)
Gene ID: Rep_2153_c_1_4
Type: CAZyme
Location: 3114 - 5315 (+)
Gene ID: Rep_2153_c_1_5
Type: STP
Location: 5383 - 6378 (+)
Gene ID: Rep_2153_c_1_6
Type: pfam
Location: 6555 - 8903 (+)
Gene ID: Rep_2153_c_1_7
Type: TC
Location: 8920 - 9687 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Lachnospirales
→
Family
Lachnospiraceae
→
Genus
Coprococcus
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2153_c_1_7 vegan > omnivore 1.93367 0.00924

🧭 Explore Read Mapping of CGC

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