Cluster: Rep_2153_CGC19
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_2153
- CGC Family ID: CGCFAM_01231
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2153_c_48 | Rep_2153_c_48_52 | 67891 | 69651 | + | 1.A.33.1.4 |
| NULL(UNKNOWN) | Rep_2153_c_48 | Rep_2153_c_48_53 | 69764 | 70159 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_2153_c_48 | Rep_2153_c_48_54 | 70193 | 71065 | + | 1.E.12.1.3 |
| pfam | Rep_2153_c_48 | Rep_2153_c_48_55 | 71070 | 71846 | + | DnaJ |
| CAZyme | Rep_2153_c_48 | Rep_2153_c_48_56 | 72014 | 74455 | + | GT35 |
| CAZyme | Rep_2153_c_48 | Rep_2153_c_48_57 | 74658 | 75725 | + | GH5_2 |
Gene ID: Rep_2153_c_48_52
Type: TC
Location: 67891 - 69651 (+)
Type: TC
Location: 67891 - 69651 (+)
Gene ID: Rep_2153_c_48_53
Type:
Location: 69764 - 70159 (+)
Type:
Location: 69764 - 70159 (+)
Gene ID: Rep_2153_c_48_54
Type: TC
Location: 70193 - 71065 (+)
Type: TC
Location: 70193 - 71065 (+)
Gene ID: Rep_2153_c_48_55
Type: pfam
Location: 71070 - 71846 (+)
Type: pfam
Location: 71070 - 71846 (+)
Gene ID: Rep_2153_c_48_56
Type: CAZyme
Location: 72014 - 74455 (+)
Type: CAZyme
Location: 72014 - 74455 (+)
Gene ID: Rep_2153_c_48_57
Type: CAZyme
Location: 74658 - 75725 (+)
Type: CAZyme
Location: 74658 - 75725 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.