Cluster: Rep_2153_CGC18
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2153
- CGC Family ID: CGCFAM_00816
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2153_c_39 | Rep_2153_c_39_11 | 15392 | 16384 | + | 9.B.157.1.1 |
| TC | Rep_2153_c_39 | Rep_2153_c_39_12 | 16399 | 18744 | + | 3.A.7.16.1 |
| TC | Rep_2153_c_39 | Rep_2153_c_39_13 | 18741 | 19448 | + | 3.A.11.1.4 |
| pfam | Rep_2153_c_39 | Rep_2153_c_39_14 | 19473 | 20414 | - | DUF624 |
| TC | Rep_2153_c_39 | Rep_2153_c_39_15 | 20532 | 22013 | - | 3.A.24.3.1 |
| pfam | Rep_2153_c_39 | Rep_2153_c_39_16 | 22180 | 22971 | + | His_biosynth |
| CAZyme | Rep_2153_c_39 | Rep_2153_c_39_17 | 22958 | 25234 | + | CBM4 | GH9 |
Gene ID: Rep_2153_c_39_11
Type: TC
Location: 15392 - 16384 (+)
Type: TC
Location: 15392 - 16384 (+)
Gene ID: Rep_2153_c_39_12
Type: TC
Location: 16399 - 18744 (+)
Type: TC
Location: 16399 - 18744 (+)
Gene ID: Rep_2153_c_39_13
Type: TC
Location: 18741 - 19448 (+)
Type: TC
Location: 18741 - 19448 (+)
Gene ID: Rep_2153_c_39_14
Type: pfam
Location: 19473 - 20414 (-)
Type: pfam
Location: 19473 - 20414 (-)
Gene ID: Rep_2153_c_39_15
Type: TC
Location: 20532 - 22013 (-)
Type: TC
Location: 20532 - 22013 (-)
Gene ID: Rep_2153_c_39_16
Type: pfam
Location: 22180 - 22971 (+)
Type: pfam
Location: 22180 - 22971 (+)
Gene ID: Rep_2153_c_39_17
Type: CAZyme
Location: 22958 - 25234 (+)
Type: CAZyme
Location: 22958 - 25234 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.