Cluster: Rep_2153_CGC17
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2153
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2153_c_38 | Rep_2153_c_38_2 | 2092 | 2649 | - | 2.A.107.1.2 |
| STP | Rep_2153_c_38 | Rep_2153_c_38_3 | 2934 | 4349 | - | AAA |
| pfam | Rep_2153_c_38 | Rep_2153_c_38_4 | 4737 | 5075 | + | P-II |
| TC | Rep_2153_c_38 | Rep_2153_c_38_5 | 5152 | 6294 | - | 2.A.45.2.6 |
| CAZyme | Rep_2153_c_38 | Rep_2153_c_38_6 | 6405 | 7880 | + | GH13_5 |
Gene ID: Rep_2153_c_38_2
Type: TC
Location: 2092 - 2649 (-)
Type: TC
Location: 2092 - 2649 (-)
Gene ID: Rep_2153_c_38_3
Type: STP
Location: 2934 - 4349 (-)
Type: STP
Location: 2934 - 4349 (-)
Gene ID: Rep_2153_c_38_4
Type: pfam
Location: 4737 - 5075 (+)
Type: pfam
Location: 4737 - 5075 (+)
Gene ID: Rep_2153_c_38_5
Type: TC
Location: 5152 - 6294 (-)
Type: TC
Location: 5152 - 6294 (-)
Gene ID: Rep_2153_c_38_6
Type: CAZyme
Location: 6405 - 7880 (+)
Type: CAZyme
Location: 6405 - 7880 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.