Cluster: Rep_2153_CGC11
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_2153
- CGC Family ID: CGCFAM_10169
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2153_c_32 | Rep_2153_c_32_30 | 43685 | 45238 | + | CBM50 |
| TC | Rep_2153_c_32 | Rep_2153_c_32_31 | 45462 | 45938 | + | 3.D.1.5.1 |
| TC | Rep_2153_c_32 | Rep_2153_c_32_32 | 45942 | 48023 | + | 3.D.1.5.1 |
| STP | Rep_2153_c_32 | Rep_2153_c_32_33 | 48038 | 49723 | + | Fer4 |
| CAZyme | Rep_2153_c_32 | Rep_2153_c_32_34 | 50005 | 58959 | + | CBM2 |
Gene ID: Rep_2153_c_32_30
Type: CAZyme
Location: 43685 - 45238 (+)
Type: CAZyme
Location: 43685 - 45238 (+)
Gene ID: Rep_2153_c_32_31
Type: TC
Location: 45462 - 45938 (+)
Type: TC
Location: 45462 - 45938 (+)
Gene ID: Rep_2153_c_32_32
Type: TC
Location: 45942 - 48023 (+)
Type: TC
Location: 45942 - 48023 (+)
Gene ID: Rep_2153_c_32_33
Type: STP
Location: 48038 - 49723 (+)
Type: STP
Location: 48038 - 49723 (+)
Gene ID: Rep_2153_c_32_34
Type: CAZyme
Location: 50005 - 58959 (+)
Type: CAZyme
Location: 50005 - 58959 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.