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Cluster: Rep_2126_CGC65

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2126_c_48 Rep_2126_c_48_1 71 1387 + GH1
CAZyme Rep_2126_c_48 Rep_2126_c_48_2 1384 3222 + GH43_28
CAZyme Rep_2126_c_48 Rep_2126_c_48_3 3219 5807 + CBM67 | GH78
TF Rep_2126_c_48 Rep_2126_c_48_4 5981 6841 + HTH_AraC
CAZyme Rep_2126_c_48 Rep_2126_c_48_5 7049 8536 + GH32
NULL(UNKNOWN) Rep_2126_c_48 Rep_2126_c_48_6 8665 9393 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_2126_c_48 Rep_2126_c_48_7 9403 10035 - 9.B.28.1.8
STP Rep_2126_c_48 Rep_2126_c_48_8 10063 10854 - Peripla_BP_3
TF Rep_2126_c_48 Rep_2126_c_48_9 10931 11170 - LacI
TC Rep_2126_c_48 Rep_2126_c_48_10 11537 12487 + 3.A.1.1.10
TC Rep_2126_c_48 Rep_2126_c_48_11 12500 13399 + 3.A.1.1.29
Gene ID: Rep_2126_c_48_1
Type: CAZyme
Location: 71 - 1387 (+)
Gene ID: Rep_2126_c_48_2
Type: CAZyme
Location: 1384 - 3222 (+)
Gene ID: Rep_2126_c_48_3
Type: CAZyme
Location: 3219 - 5807 (+)
Gene ID: Rep_2126_c_48_4
Type: TF
Location: 5981 - 6841 (+)
Gene ID: Rep_2126_c_48_5
Type: CAZyme
Location: 7049 - 8536 (+)
Gene ID: Rep_2126_c_48_6
Type:
Location: 8665 - 9393 (-)
Gene ID: Rep_2126_c_48_7
Type: TC
Location: 9403 - 10035 (-)
Gene ID: Rep_2126_c_48_8
Type: STP
Location: 10063 - 10854 (-)
Gene ID: Rep_2126_c_48_9
Type: TF
Location: 10931 - 11170 (-)
Gene ID: Rep_2126_c_48_10
Type: TC
Location: 11537 - 12487 (+)
Gene ID: Rep_2126_c_48_11
Type: TC
Location: 12500 - 13399 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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