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Cluster: Rep_2126_CGC61

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2126_c_40 Rep_2126_c_40_4 3427 4746 + 3.A.1.1.45
TC Rep_2126_c_40 Rep_2126_c_40_5 4835 5683 + 3.A.1.1.45
TC Rep_2126_c_40 Rep_2126_c_40_6 5683 6522 + 3.A.1.1.45
CAZyme Rep_2126_c_40 Rep_2126_c_40_7 6557 8041 + GH77
TF Rep_2126_c_40 Rep_2126_c_40_8 8134 9162 + LacI
TC Rep_2126_c_40 Rep_2126_c_40_9 9261 10643 + 2.A.66.1.26
TC Rep_2126_c_40 Rep_2126_c_40_10 10725 13655 + 3.A.7.16.1
Gene ID: Rep_2126_c_40_4
Type: TC
Location: 3427 - 4746 (+)
Gene ID: Rep_2126_c_40_5
Type: TC
Location: 4835 - 5683 (+)
Gene ID: Rep_2126_c_40_6
Type: TC
Location: 5683 - 6522 (+)
Gene ID: Rep_2126_c_40_7
Type: CAZyme
Location: 6557 - 8041 (+)
Gene ID: Rep_2126_c_40_8
Type: TF
Location: 8134 - 9162 (+)
Gene ID: Rep_2126_c_40_9
Type: TC
Location: 9261 - 10643 (+)
Gene ID: Rep_2126_c_40_10
Type: TC
Location: 10725 - 13655 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2126_c_40_6 vegetarian > vegan 1.01047 0.01287

🧭 Explore Read Mapping of CGC

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