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Cluster: Rep_2126_CGC60

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2126_c_35 Rep_2126_c_35_15 14993 16543 - GH28
TF Rep_2126_c_35 Rep_2126_c_35_16 16579 18066 - HTH_AraC
TC Rep_2126_c_35 Rep_2126_c_35_17 18059 19846 - 8.A.59.2.1
STP Rep_2126_c_35 Rep_2126_c_35_18 19850 21139 - SBP_bac_1
TC Rep_2126_c_35 Rep_2126_c_35_19 21298 22140 - 3.A.1.1.11
TC Rep_2126_c_35 Rep_2126_c_35_20 22140 23039 - 3.A.1.1.11
STP Rep_2126_c_35 Rep_2126_c_35_21 23112 24413 - SBP_bac_1
CAZyme Rep_2126_c_35 Rep_2126_c_35_22 24524 27898 - GH115
CAZyme Rep_2126_c_35 Rep_2126_c_35_23 27936 29429 - CBM91 | GH43_12
CAZyme Rep_2126_c_35 Rep_2126_c_35_24 29491 31836 - GH2
Gene ID: Rep_2126_c_35_15
Type: CAZyme
Location: 14993 - 16543 (-)
Gene ID: Rep_2126_c_35_16
Type: TF
Location: 16579 - 18066 (-)
Gene ID: Rep_2126_c_35_17
Type: TC
Location: 18059 - 19846 (-)
Gene ID: Rep_2126_c_35_18
Type: STP
Location: 19850 - 21139 (-)
Gene ID: Rep_2126_c_35_19
Type: TC
Location: 21298 - 22140 (-)
Gene ID: Rep_2126_c_35_20
Type: TC
Location: 22140 - 23039 (-)
Gene ID: Rep_2126_c_35_21
Type: STP
Location: 23112 - 24413 (-)
Gene ID: Rep_2126_c_35_22
Type: CAZyme
Location: 24524 - 27898 (-)
Gene ID: Rep_2126_c_35_23
Type: CAZyme
Location: 27936 - 29429 (-)
Gene ID: Rep_2126_c_35_24
Type: CAZyme
Location: 29491 - 31836 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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