Cluster: Rep_2126_CGC59
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_2126
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2126_c_30 | Rep_2126_c_30_9 | 8455 | 10188 | - | 3.A.1.21.1 |
| TC | Rep_2126_c_30 | Rep_2126_c_30_10 | 10181 | 11944 | - | 3.A.1.21.1 |
| STP | Rep_2126_c_30 | Rep_2126_c_30_11 | 12080 | 12709 | - | TetR_N |
| CAZyme | Rep_2126_c_30 | Rep_2126_c_30_12 | 12938 | 15370 | - | GH2 |
| CAZyme | Rep_2126_c_30 | Rep_2126_c_30_13 | 15407 | 17767 | - | GH3 |
| CAZyme | Rep_2126_c_30 | Rep_2126_c_30_14 | 17770 | 20886 | - | GH38 |
| pfam | Rep_2126_c_30 | Rep_2126_c_30_15 | 21012 | 22436 | - | SBP_bac_1 | DUF3502 |
| TC | Rep_2126_c_30 | Rep_2126_c_30_16 | 22590 | 23516 | - | 3.A.1.1.29 |
| TC | Rep_2126_c_30 | Rep_2126_c_30_17 | 23529 | 24485 | - | 3.A.1.1.25 |
| TF | Rep_2126_c_30 | Rep_2126_c_30_18 | 24475 | 25482 | - | LacI |
| CAZyme | Rep_2126_c_30 | Rep_2126_c_30_19 | 25916 | 28180 | - | GH2 |
| peptidase | Rep_2126_c_30 | Rep_2126_c_30_20 | 28499 | 29104 | + | S33.UPW |
| pfam | Rep_2126_c_30 | Rep_2126_c_30_21 | 29284 | 30198 | - | DHDPS |
| TC | Rep_2126_c_30 | Rep_2126_c_30_22 | 30245 | 31162 | - | 8.A.5.1.7 |
| pfam | Rep_2126_c_30 | Rep_2126_c_30_23 | 31223 | 32143 | - | DHDPS |
| TC | Rep_2126_c_30 | Rep_2126_c_30_24 | 32199 | 33026 | - | 3.A.1.1.39 |
| TC | Rep_2126_c_30 | Rep_2126_c_30_25 | 33030 | 33950 | - | 3.A.1.1.20 |
Gene ID: Rep_2126_c_30_9
Type: TC
Location: 8455 - 10188 (-)
Type: TC
Location: 8455 - 10188 (-)
Gene ID: Rep_2126_c_30_10
Type: TC
Location: 10181 - 11944 (-)
Type: TC
Location: 10181 - 11944 (-)
Gene ID: Rep_2126_c_30_11
Type: STP
Location: 12080 - 12709 (-)
Type: STP
Location: 12080 - 12709 (-)
Gene ID: Rep_2126_c_30_12
Type: CAZyme
Location: 12938 - 15370 (-)
Type: CAZyme
Location: 12938 - 15370 (-)
Gene ID: Rep_2126_c_30_13
Type: CAZyme
Location: 15407 - 17767 (-)
Type: CAZyme
Location: 15407 - 17767 (-)
Gene ID: Rep_2126_c_30_14
Type: CAZyme
Location: 17770 - 20886 (-)
Type: CAZyme
Location: 17770 - 20886 (-)
Gene ID: Rep_2126_c_30_15
Type: pfam
Location: 21012 - 22436 (-)
Type: pfam
Location: 21012 - 22436 (-)
Gene ID: Rep_2126_c_30_16
Type: TC
Location: 22590 - 23516 (-)
Type: TC
Location: 22590 - 23516 (-)
Gene ID: Rep_2126_c_30_17
Type: TC
Location: 23529 - 24485 (-)
Type: TC
Location: 23529 - 24485 (-)
Gene ID: Rep_2126_c_30_18
Type: TF
Location: 24475 - 25482 (-)
Type: TF
Location: 24475 - 25482 (-)
Gene ID: Rep_2126_c_30_19
Type: CAZyme
Location: 25916 - 28180 (-)
Type: CAZyme
Location: 25916 - 28180 (-)
Gene ID: Rep_2126_c_30_20
Type: peptidase
Location: 28499 - 29104 (+)
Type: peptidase
Location: 28499 - 29104 (+)
Gene ID: Rep_2126_c_30_21
Type: pfam
Location: 29284 - 30198 (-)
Type: pfam
Location: 29284 - 30198 (-)
Gene ID: Rep_2126_c_30_22
Type: TC
Location: 30245 - 31162 (-)
Type: TC
Location: 30245 - 31162 (-)
Gene ID: Rep_2126_c_30_23
Type: pfam
Location: 31223 - 32143 (-)
Type: pfam
Location: 31223 - 32143 (-)
Gene ID: Rep_2126_c_30_24
Type: TC
Location: 32199 - 33026 (-)
Type: TC
Location: 32199 - 33026 (-)
Gene ID: Rep_2126_c_30_25
Type: TC
Location: 33030 - 33950 (-)
Type: TC
Location: 33030 - 33950 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Marvinbryantia
Species
Marvinbryantia sp900550755
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.