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Cluster: Rep_2126_CGC56

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2126_c_27 Rep_2126_c_27_9 10318 11235 + 3.A.1.5.2
TC Rep_2126_c_27 Rep_2126_c_27_10 11250 12302 + 3.A.1.5.19
TC Rep_2126_c_27 Rep_2126_c_27_11 12316 13314 + 3.A.1.5.41
TC Rep_2126_c_27 Rep_2126_c_27_12 13311 14363 + 3.A.1.5.20
TC Rep_2126_c_27 Rep_2126_c_27_13 14590 16209 + 3.A.1.5.41
pfam Rep_2126_c_27 Rep_2126_c_27_14 16337 17734 + CAP | Flg_new
TC Rep_2126_c_27 Rep_2126_c_27_15 17809 18654 + 3.A.1.132.3
TC Rep_2126_c_27 Rep_2126_c_27_16 18828 19850 + 2.A.85.5.1
CAZyme Rep_2126_c_27 Rep_2126_c_27_17 19855 20616 - GH23
Gene ID: Rep_2126_c_27_9
Type: TC
Location: 10318 - 11235 (+)
Gene ID: Rep_2126_c_27_10
Type: TC
Location: 11250 - 12302 (+)
Gene ID: Rep_2126_c_27_11
Type: TC
Location: 12316 - 13314 (+)
Gene ID: Rep_2126_c_27_12
Type: TC
Location: 13311 - 14363 (+)
Gene ID: Rep_2126_c_27_13
Type: TC
Location: 14590 - 16209 (+)
Gene ID: Rep_2126_c_27_14
Type: pfam
Location: 16337 - 17734 (+)
Gene ID: Rep_2126_c_27_15
Type: TC
Location: 17809 - 18654 (+)
Gene ID: Rep_2126_c_27_16
Type: TC
Location: 18828 - 19850 (+)
Gene ID: Rep_2126_c_27_17
Type: CAZyme
Location: 19855 - 20616 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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