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Cluster: Rep_2126_CGC47

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2126_c_18 Rep_2126_c_18_13 11864 12670 + 3.A.1.104.1
TC Rep_2126_c_18 Rep_2126_c_18_14 12735 14069 + 3.A.1.103.6
CAZyme Rep_2126_c_18 Rep_2126_c_18_15 14103 19709 + GT2
pfam Rep_2126_c_18 Rep_2126_c_18_16 19742 22417 + YfhO
CAZyme Rep_2126_c_18 Rep_2126_c_18_17 22386 24212 + GT2 | GT2
STP Rep_2126_c_18 Rep_2126_c_18_18 24205 25335 + Aminotran_1_2
CAZyme Rep_2126_c_18 Rep_2126_c_18_19 25345 26295 + GT2
TC Rep_2126_c_18 Rep_2126_c_18_20 26384 27784 + 9.B.18.1.1
pfam Rep_2126_c_18 Rep_2126_c_18_21 27824 29320 + LytR_cpsA_psr
CAZyme Rep_2126_c_18 Rep_2126_c_18_22 29317 30285 + GT2
Gene ID: Rep_2126_c_18_13
Type: TC
Location: 11864 - 12670 (+)
Gene ID: Rep_2126_c_18_14
Type: TC
Location: 12735 - 14069 (+)
Gene ID: Rep_2126_c_18_15
Type: CAZyme
Location: 14103 - 19709 (+)
Gene ID: Rep_2126_c_18_16
Type: pfam
Location: 19742 - 22417 (+)
Gene ID: Rep_2126_c_18_17
Type: CAZyme
Location: 22386 - 24212 (+)
Gene ID: Rep_2126_c_18_18
Type: STP
Location: 24205 - 25335 (+)
Gene ID: Rep_2126_c_18_19
Type: CAZyme
Location: 25345 - 26295 (+)
Gene ID: Rep_2126_c_18_20
Type: TC
Location: 26384 - 27784 (+)
Gene ID: Rep_2126_c_18_21
Type: pfam
Location: 27824 - 29320 (+)
Gene ID: Rep_2126_c_18_22
Type: CAZyme
Location: 29317 - 30285 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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