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Cluster: Rep_2126_CGC43

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2126_c_14 Rep_2126_c_14_48 50809 51591 + 3.A.1.31.1
TC Rep_2126_c_14 Rep_2126_c_14_49 51588 52403 + 3.A.1.106.2
STP Rep_2126_c_14 Rep_2126_c_14_50 52580 53197 + TetR_N
CAZyme Rep_2126_c_14 Rep_2126_c_14_51 53360 54871 + GH79
pfam Rep_2126_c_14 Rep_2126_c_14_52 54947 56227 + HGD-D
pfam Rep_2126_c_14 Rep_2126_c_14_53 56224 57879 + BcrAD_BadFG | HGD-D | HGD-D
TC Rep_2126_c_14 Rep_2126_c_14_54 57932 58525 - 9.B.31.1.2
Gene ID: Rep_2126_c_14_48
Type: TC
Location: 50809 - 51591 (+)
Gene ID: Rep_2126_c_14_49
Type: TC
Location: 51588 - 52403 (+)
Gene ID: Rep_2126_c_14_50
Type: STP
Location: 52580 - 53197 (+)
Gene ID: Rep_2126_c_14_51
Type: CAZyme
Location: 53360 - 54871 (+)
Gene ID: Rep_2126_c_14_52
Type: pfam
Location: 54947 - 56227 (+)
Gene ID: Rep_2126_c_14_53
Type: pfam
Location: 56224 - 57879 (+)
Gene ID: Rep_2126_c_14_54
Type: TC
Location: 57932 - 58525 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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