Cluster: Rep_2126_CGC40
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_2126
- CGC Family ID: CGCFAM_00806
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2126_c_13 | Rep_2126_c_13_44 | 53990 | 54874 | + | 3.A.1.1.20 |
| TC | Rep_2126_c_13 | Rep_2126_c_13_45 | 54886 | 55764 | + | 3.A.1.1.41 |
| CAZyme | Rep_2126_c_13 | Rep_2126_c_13_46 | 55793 | 58108 | + | GH65 |
| CAZyme | Rep_2126_c_13 | Rep_2126_c_13_47 | 58110 | 60302 | + | GH65 |
| TF | Rep_2126_c_13 | Rep_2126_c_13_48 | 60265 | 61284 | - | LacI |
| pfam | Rep_2126_c_13 | Rep_2126_c_13_49 | 61388 | 62032 | + | Hydrolase | Hydrolase_like | HAD_2 |
| TC | Rep_2126_c_13 | Rep_2126_c_13_50 | 62360 | 64984 | + | 4.A.2.1.17 |
Gene ID: Rep_2126_c_13_44
Type: TC
Location: 53990 - 54874 (+)
Type: TC
Location: 53990 - 54874 (+)
Gene ID: Rep_2126_c_13_45
Type: TC
Location: 54886 - 55764 (+)
Type: TC
Location: 54886 - 55764 (+)
Gene ID: Rep_2126_c_13_46
Type: CAZyme
Location: 55793 - 58108 (+)
Type: CAZyme
Location: 55793 - 58108 (+)
Gene ID: Rep_2126_c_13_47
Type: CAZyme
Location: 58110 - 60302 (+)
Type: CAZyme
Location: 58110 - 60302 (+)
Gene ID: Rep_2126_c_13_48
Type: TF
Location: 60265 - 61284 (-)
Type: TF
Location: 60265 - 61284 (-)
Gene ID: Rep_2126_c_13_49
Type: pfam
Location: 61388 - 62032 (+)
Type: pfam
Location: 61388 - 62032 (+)
Gene ID: Rep_2126_c_13_50
Type: TC
Location: 62360 - 64984 (+)
Type: TC
Location: 62360 - 64984 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Marvinbryantia
Species
Marvinbryantia sp900550755
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.